C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: activated leukocyte cell adhesion molecule
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170017 ALCAM 9606 + 3:105366909-105576900 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306107 ALCAM-001 105366909-105576900 protein_coding
  ENST00000460954 ALCAM-008 105531235-105540057 processed_transcript
  ENST00000465413 ALCAM-007 105533602-105575914 protein_coding
  ENST00000470756 ALCAM-003 105366918-105525393 retained_intron
  ENST00000472644 ALCAM-002 105367343-105576861 protein_coding
  ENST00000481337 ALCAM-004 105439338-105545310 processed_transcript
  ENST00000486979 ALCAM-005 105513325-105574552 protein_coding
  ENST00000489178 ALCAM-009 105550220-105553171 retained_intron
  ENST00000491388 ALCAM-006 105544602-105575914 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306107ENST00000465413ENST00000470756ENST00000472644ENST00000486979ENST00000491388
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306107 1.207±0.00 2.340±0.00 1.541±0.00 13.380±4.66 4.549±1.64 5.510±0.00 0.368±0.15 4.334±2.21 5.299±1.79 12.823±5.08 0.231±0.00 7.187±4.12 2.061±1.21 1.955±1.60
ENST00000465413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.850±0.00
ENST00000470756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.497±0.00 N/A N/A N/A
ENST00000472644 N/A 0.958±0.00 0.708±0.00 7.403±1.00 N/A 1.371±0.74 0.174±0.03 1.302±0.00 1.740±0.00 7.774±4.87 N/A 2.889±0.83 0.745±0.18 0.410±0.00
ENST00000486979 N/A N/A N/A 6.172±0.00 N/A 1.540±0.00 0.572±0.00 N/A 5.212±0.00 15.442±0.00 N/A 6.250±0.00 N/A 0.751±0.00
ENST00000491388 N/A N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005102 TAS receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005925 IDA focal adhesion
GO:0007155 IEA cell adhesion
GO:0007165 TAS signal transduction
GO:0007411 TAS axon guidance
GO:0008045 IEA motor neuron axon guidance
GO:0009897 IEA external side of plasma membrane
GO:0016021 IEA integral component of membrane
GO:0030424 IEA axon
GO:0043025 IEA neuronal cell body
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026531 alcama activated leukocyte cell adhesion molecule a protein_coding Danio_rerio
ENSDARG00000058538 alcamb activated leukocyte cell adhesion molecule b protein_coding Danio_rerio
ENSMUSG00000022636 Alcam activated leukocyte cell adhesion molecule protein_coding Mus_musculus

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