C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: activated leukocyte cell adhesion molecule
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022636 Alcam 10090 - 16:52248996-52454074 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023312 Alcam-001 52248996-52454074 protein_coding
  ENSMUST00000163788 Alcam-007 52253188-52269061 retained_intron
  ENSMUST00000164728 Alcam-005 52268161-52452465 protein_coding
  ENSMUST00000164888 Alcam-006 52253221-52271115 retained_intron
  ENSMUST00000167115 Alcam-003 52251087-52296924 protein_coding
  ENSMUST00000168071 Alcam-002 52305264-52452654 protein_coding
  ENSMUST00000170035 Alcam-004 52251467-52452465 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023312ENSMUST00000163788ENSMUST00000164728ENSMUST00000167115ENSMUST00000168071ENSMUST00000170035
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023312 8.084±1.60 4.129±1.31 4.147±1.69 3.676±2.04 6.217±1.12 3.754±0.45 0.806±0.10 3.144±1.12 4.184±1.37 40.659±2.39 0.052±0.02 5.085±2.81 0.767±0.65 0.393±0.06
ENSMUST00000163788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.328±0.00 N/A
ENSMUST00000164728 5.037±0.00 N/A N/A N/A 4.213±1.15 N/A 0.224±0.00 N/A 2.938±0.00 N/A 0.069±0.05 N/A 0.208±0.00 0.372±0.00
ENSMUST00000167115 N/A N/A N/A 12.580±0.00 N/A N/A N/A N/A N/A N/A 0.161±0.01 4.659±0.00 0.157±0.07 0.220±0.00
ENSMUST00000168071 7.800±1.64 4.034±0.00 N/A N/A 6.908±1.49 4.634±0.65 0.715±0.13 2.961±0.00 N/A 43.937±6.62 N/A 6.037±1.28 N/A N/A
ENSMUST00000170035 N/A N/A 6.869±0.39 12.111±3.98 7.240±0.00 N/A N/A N/A 4.092±1.05 N/A 0.055±0.00 7.168±3.31 0.788±0.62 0.418±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IY CIL_0003IY_0002 CGP 16:52031549-52454074

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005925 IEA focal adhesion
GO:0007155 IEA cell adhesion
GO:0007411 IMP axon guidance
GO:0008045 IMP motor neuron axon guidance
GO:0009897 IDA external side of plasma membrane
GO:0016021 IEA integral component of membrane
GO:0030424 IDA axon
GO:0043025 IDA neuronal cell body
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026531 alcama activated leukocyte cell adhesion molecule a protein_coding Danio_rerio
ENSDARG00000058538 alcamb activated leukocyte cell adhesion molecule b protein_coding Danio_rerio
ENSG00000170017 ALCAM activated leukocyte cell adhesion molecule protein_coding Homo_sapiens

Loading