C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histidyl-tRNA synthetase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170445 HARS 9606 - 5:140673173-140692024 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307633 HARS-008 140673906-140691383 protein_coding
  ENST00000415192 HARS-011 140674201-140691341 protein_coding
  ENST00000431330 HARS-005 140673904-140691537 protein_coding
  ENST00000438307 HARS-012 140673915-140691341 protein_coding
  ENST00000457527 HARS-009 140673904-140691377 protein_coding
  ENST00000502888 HARS-015 140682761-140691296 retained_intron
  ENST00000504156 HARS-001 140673173-140692024 protein_coding
  ENST00000504366 HARS-003 140673906-140685338 protein_coding
  ENST00000506579 HARS-002 140675423-140691341 retained_intron
  ENST00000507746 HARS-006 140676653-140691389 protein_coding
  ENST00000509087 HARS-016 140674174-140675333 retained_intron
  ENST00000512396 HARS-014 140679103-140691341 nonsense_mediated_decay
  ENST00000518126 HARS-017 140679389-140691339 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000415192ENST00000438307ENST00000457527ENST00000504366
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000415192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.141±0.00 N/A 33.576±0.00
ENST00000438307 26.173±0.00 37.897±0.00 21.581±12.84 19.999±15.53 15.950±9.79 11.964±0.00 29.666±0.00 9.249±4.96 27.143±0.00 15.754±0.00 28.092±1.91 14.189±0.37 26.021±0.00
ENST00000457527 N/A N/A 19.882±7.07 N/A 19.874±0.00 4.679±3.42 6.491±0.00 8.311±4.41 5.919±0.00 12.566±0.00 3.501±0.00 12.149±0.00 17.582±0.00
ENST00000504366 N/A N/A N/A N/A N/A 0.834±0.00 N/A N/A N/A N/A 2.095±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZH CIL_0006ZH_0001 CGP 5:140647058-140674124
CIL_0006ZK CIL_0006ZK_0001 CGP 5:140664676-140674124
CIL_0006ZJ CIL_0006ZJ_0001 CGP 5:140670794-140692024
CIL_0006ZR CIL_0006ZR_0001 CGP 5:140673173-140699291

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004821 NAS histidine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005737 IDA:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006412 NAS translation
GO:0006418 IEA:TAS tRNA aminoacylation for protein translation
GO:0006427 IEA histidyl-tRNA aminoacylation
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003693 hars histidyl-tRNA synthetase protein_coding Danio_rerio
ENSMUSG00000001380 Hars histidyl-tRNA synthetase protein_coding Mus_musculus

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