C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 23 (ascorbic acid transporter), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170482 SLC23A1 9606 - 5:139367196-139384553 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000348729 SLC23A1-001 139367196-139383300 protein_coding
  ENST00000353963 SLC23A1-002 139367196-139383292 protein_coding
  ENST00000502863 SLC23A1-006 139380826-139382413 retained_intron
  ENST00000503919 SLC23A1-007 139380598-139383301 processed_transcript
  ENST00000504513 SLC23A1-009 139378591-139380607 protein_coding
  ENST00000506512 SLC23A1-008 139379331-139380213 retained_intron
  ENST00000508270 SLC23A1-005 139381913-139384553 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000348729ENST00000353963ENST00000502863ENST00000504513ENST00000506512ENST00000508270
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000348729 N/A 0.183±0.00 5.582±0.00 0.363±0.00 0.125±0.00 0.306±0.00 0.099±0.05 2.598±0.00 4.089±0.00 1.590±0.00 0.786±1.04 0.049±0.01 0.066±0.00
ENST00000353963 N/A N/A N/A N/A N/A N/A N/A 2.393±0.00 N/A N/A 0.612±0.58 0.045±0.01 0.076±0.01
ENST00000502863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.131±0.00 N/A
ENST00000504513 0.202±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.232±0.00 N/A
ENST00000506512 N/A N/A N/A N/A N/A N/A 0.250±0.00 N/A N/A N/A N/A N/A N/A
ENST00000508270 N/A N/A N/A 0.552±0.00 N/A N/A N/A N/A N/A N/A N/A 0.194±0.00 0.101±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D0 CIL_0005D0_0001 CGP 5:139273752-139369720
CIL_000542 CIL_000542_0001 CGP 5:139341587-139384553
CIL_000543 CIL_000543_0001 CGP 5:139367196-139390081

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005903 IEA brush border
GO:0006139 TAS nucleobase-containing compound metabolic process
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0006810 IEA transport
GO:0006814 IDA sodium ion transport
GO:0007420 ISS brain development
GO:0008520 IDA L-ascorbate:sodium symporter activity
GO:0009636 IDA response to toxic substance
GO:0009925 IEA basal plasma membrane
GO:0015081 IDA sodium ion transmembrane transporter activity
GO:0015205 TAS nucleobase transmembrane transporter activity
GO:0015229 IDA L-ascorbic acid transporter activity
GO:0015851 TAS nucleobase transport
GO:0015882 IDA L-ascorbic acid transport
GO:0016020 TAS:IEA membrane
GO:0016324 IDA apical plasma membrane
GO:0019852 TAS L-ascorbic acid metabolic process
GO:0030324 IEA lung development
GO:0033300 IMP dehydroascorbic acid transporter activity
GO:0035461 IDA vitamin transmembrane transport
GO:0035725 IDA sodium ion transmembrane transport
GO:0043229 IDA intracellular organelle
GO:0044281 TAS small molecule metabolic process
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0070837 IMP dehydroascorbic acid transport
GO:0070890 IDA sodium-dependent L-ascorbate transmembrane transporter activity
GO:0070904 IDA transepithelial L-ascorbic acid transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015033 slc23a1 solute carrier family 23 (nucleobase transporters), member 1 protein_coding Danio_rerio
ENSMUSG00000024354 Slc23a1 solute carrier family 23 (nucleobase transporters), member 1 protein_coding Mus_musculus

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