C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 23 (nucleobase transporters), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024354 Slc23a1 10090 - 18:35614604-35627244 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025212 Slc23a1-001 35614604-35627244 protein_coding
  ENSMUST00000123242 Slc23a1-003 35622824-35627236 processed_transcript
  ENSMUST00000150877 Slc23a1-002 35619374-35627196 nonsense_mediated_decay
  ENSMUST00000153293 Slc23a1-004 35620070-35622606 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025212ENSMUST00000123242ENSMUST00000150877ENSMUST00000153293
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025212 N/A 0.116±0.04 1.250±0.10 0.296±0.12 0.179±0.07 0.037±0.01 0.059±0.04 18.390±2.00 4.290±2.43 N/A 0.039±0.02 3.514±1.71 3.463±4.26 0.170±0.05
ENSMUST00000123242 N/A 0.151±0.00 N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150877 3.315±2.39 0.144±0.00 1.015±0.48 N/A 0.074±0.00 N/A 0.125±0.00 78.329±25.97 15.175±13.82 4.833±0.93 N/A 7.949±3.14 12.634±2.05 0.704±0.00
ENSMUST00000153293 N/A N/A N/A N/A 0.621±0.13 N/A 0.055±0.00 N/A N/A N/A 0.085±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D0 CIL_0005D0_0002 CGP 18:35562146-35617186
CIL_000542 CIL_000542_0002 CGP 18:35598617-35627244
CIL_000543 CIL_000543_0002 CGP 18:35614604-35649367

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005886 ISS plasma membrane
GO:0005903 IEA brush border
GO:0006814 ISS sodium ion transport
GO:0007420 IMP brain development
GO:0008520 IEA L-ascorbate:sodium symporter activity
GO:0009636 ISS response to toxic substance
GO:0009925 IDA basal plasma membrane
GO:0015081 ISS sodium ion transmembrane transporter activity
GO:0015229 IMP L-ascorbic acid transporter activity
GO:0015882 IMP L-ascorbic acid transport
GO:0016021 IEA integral component of membrane
GO:0016324 ISS apical plasma membrane
GO:0030324 IMP lung development
GO:0033300 ISS dehydroascorbic acid transporter activity
GO:0035461 ISS vitamin transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0043229 ISS intracellular organelle
GO:0070062 IEA extracellular vesicular exosome
GO:0070837 ISS dehydroascorbic acid transport
GO:0070890 ISS sodium-dependent L-ascorbate transmembrane transporter activity
GO:0070904 ISS transepithelial L-ascorbic acid transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015033 slc23a1 solute carrier family 23 (nucleobase transporters), member 1 protein_coding Danio_rerio
ENSG00000170482 SLC23A1 solute carrier family 23 (ascorbic acid transporter), member 1 protein_coding Homo_sapiens

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