C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 23 (ascorbic acid transporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000348729 SLC23A1-001 ENSG00000170482 9606 - 5:139367196-139383300 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000348729
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000348729 0.183±0.00 5.582±0.00 0.363±0.00 0.125±0.00 0.306±0.00 0.099±0.05 2.598±0.00 4.089±0.00 1.590±0.00 0.786±1.04 0.049±0.01 0.066±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D0 CIL_0005D0_0001 CGP 5:139273752-139369720
CIL_000542 CIL_000542_0001 CGP 5:139341587-139384553
CIL_000543 CIL_000543_0001 CGP 5:139367196-139390081

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006139 TAS nucleobase-containing compound metabolic process
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0006810 IEA transport
GO:0006814 IDA sodium ion transport
GO:0007420 ISS brain development
GO:0008520 IDA L-ascorbate:sodium symporter activity
GO:0009636 IDA response to toxic substance
GO:0015081 IDA sodium ion transmembrane transporter activity
GO:0015205 TAS nucleobase transmembrane transporter activity
GO:0015229 IDA L-ascorbic acid transporter activity
GO:0015851 TAS nucleobase transport
GO:0015882 IDA L-ascorbic acid transport
GO:0016020 TAS:IEA membrane
GO:0016324 IDA apical plasma membrane
GO:0019852 TAS L-ascorbic acid metabolic process
GO:0033300 IMP dehydroascorbic acid transporter activity
GO:0035461 IDA vitamin transmembrane transport
GO:0035725 IDA sodium ion transmembrane transport
GO:0043229 IDA intracellular organelle
GO:0044281 TAS small molecule metabolic process
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0070837 IMP dehydroascorbic acid transport
GO:0070890 IDA sodium-dependent L-ascorbate transmembrane transporter activity
GO:0070904 IDA transepithelial L-ascorbic acid transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025212 Slc23a1-001 protein_coding Mus_musculus 0 2039
ENSMUST00000150877 Slc23a1-002 nonsense_mediated_decay Mus_musculus 0 2015

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