C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005D0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000015479-ENSG00000120727 CGP 9606 5:139273752-139369720
GeneTranscriptPositionBiotype
ENSG00000120727 (PAIP2)
poly(A) binding protein interacting protein 2 		ENST00000265192 (PAIP2-001) 139341832-139369698 protein_coding
ENST00000394795 (PAIP2-002) 139342442-139369720 protein_coding
ENST00000507415 (PAIP2-006) 139341919-139364042 retained_intron
ENST00000507755 (PAIP2-004) 139341587-139364704 protein_coding
ENST00000510080 (PAIP2-003) 139342451-139369080 protein_coding
ENST00000510409 (PAIP2-005) 139341857-139365090 retained_intron
ENST00000511381 (PAIP2-007) 139341862-139368798 processed_transcript
ENST00000511706 (PAIP2-008) 139341878-139368933 protein_coding
ENSG00000170482 (SLC23A1)
solute carrier family 23 (ascorbic acid transporter), member 1 		ENST00000348729 (SLC23A1-001) 139367196-139383300 protein_coding
ENST00000353963 (SLC23A1-002) 139367196-139383292 protein_coding
ENST00000502863 (SLC23A1-006) 139380826-139382413 retained_intron
ENST00000503919 (SLC23A1-007) 139380598-139383301 processed_transcript
ENST00000504513 (SLC23A1-009) 139378591-139380607 protein_coding
ENST00000506512 (SLC23A1-008) 139379331-139380213 retained_intron
ENST00000508270 (SLC23A1-005) 139381913-139384553 protein_coding
ENSG00000199545 (RNA5SP195)
RNA, 5S ribosomal pseudogene 195 		ENST00000362675 (RNA5SP195-201) 139299852-139299968 rRNA
ENSG00000200959 (SNORA74A)
small nucleolar RNA, H/ACA box 74A 		ENST00000364089 (SNORA74A-201) 139278781-139278978 snoRNA
ENSG00000252213 (SNORA74)
Small nucleolar RNA SNORA74 		ENST00000516404 (SNORA74.1-203) 139276180-139276320 snoRNA
ENSG00000253015 (RN7SKP64)
RNA, 7SK small nuclear pseudogene 64 		ENST00000517206 (RN7SKP64-201) 139333038-139333365 misc_RNA
ENSG00000272742 (PAIP2)
poly(A) binding protein interacting protein 2 		ENST00000503553 (PAIP2-001) 139364677-139369717 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0005D0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037236-ENSMUSG00000037058 CGP 10090 18:35562146-35617186
GeneTranscriptPositionBiotype
ENSMUSG00000024354 (Slc23a1)
solute carrier family 23 (nucleobase transporters), member 1 		ENSMUST00000025212 (Slc23a1-001) 35614604-35627244 protein_coding
ENSMUST00000123242 (Slc23a1-003) 35622824-35627236 processed_transcript
ENSMUST00000150877 (Slc23a1-002) 35619374-35627196 nonsense_mediated_decay
ENSMUST00000153293 (Slc23a1-004) 35620070-35622606 processed_transcript
ENSMUSG00000037058 (Paip2)
polyadenylate-binding protein-interacting protein 2 		ENSMUST00000041314 (Paip2-001) 35598617-35617186 protein_coding
ENSMUST00000115734 (Paip2-004) 35599237-35616395 protein_coding
ENSMUST00000115735 (Paip2-005) 35598649-35617183 protein_coding
ENSMUST00000115736 (Paip2-003) 35598641-35616519 protein_coding
ENSMUST00000115737 (Paip2-002) 35598624-35616350 protein_coding
ENSMUST00000151126 (Paip2-006) 35610284-35613425 retained_intron
ENSMUST00000152312 (Paip2-007) 35610985-35613874 retained_intron
ENSMUSG00000037236 (Matr3)
matrin 3 		ENSMUST00000166793 (Matr3-001) 35562158-35593835 protein_coding
ENSMUST00000186158 (Matr3-012) 35577901-35579276 retained_intron
ENSMUST00000186292 (Matr3-011) 35562683-35572203 protein_coding
ENSMUST00000186614 (Matr3-010) 35562689-35579293 protein_coding
ENSMUST00000186796 (Matr3-005) 35562219-35590581 protein_coding
ENSMUST00000187389 (Matr3-008) 35562445-35590738 protein_coding
ENSMUST00000187543 (Matr3-009) 35562192-35572123 protein_coding
ENSMUST00000187980 (Matr3-016) 35571927-35573707 retained_intron
ENSMUST00000188275 (Matr3-006) 35562299-35590529 protein_coding
ENSMUST00000188359 (Matr3-015) 35562146-35572490 protein_coding
ENSMUST00000188767 (Matr3-004) 35562217-35590621 nonsense_mediated_decay
ENSMUST00000189019 (Matr3-014) 35579027-35580726 retained_intron
ENSMUST00000189039 (Matr3-013) 35562487-35579008 protein_coding
ENSMUST00000190029 (Matr3-007) 35562453-35590464 protein_coding
ENSMUST00000190121 (Matr3-002) 35562211-35591419 protein_coding
ENSMUST00000190653 (Matr3-003) 35562211-35590598 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005D0_0001ENSG00000120727ENST00000265192ENST00000394795ENST00000507415ENST00000507755ENST00000510080ENST00000510409ENST00000511381ENST00000511706ENSG00000170482ENST00000348729ENST00000353963ENST00000502863ENST00000503919ENST00000504513ENST00000506512ENST00000508270ENSG00000199545ENST00000362675ENSG00000200959ENST00000364089ENSG00000252213ENST00000516404ENSG00000253015ENST00000517206ENSG00000272742ENST00000503553CIL_0005D0_0002ENSMUSG00000024354ENSMUST00000025212ENSMUST00000123242ENSMUST00000150877ENSMUST00000153293ENSMUSG00000037058ENSMUST00000041314ENSMUST00000115734ENSMUST00000115735ENSMUST00000115736ENSMUST00000115737ENSMUST00000151126ENSMUST00000152312ENSMUSG00000037236ENSMUST00000166793ENSMUST00000186158ENSMUST00000186292ENSMUST00000186614ENSMUST00000186796ENSMUST00000187389ENSMUST00000187543ENSMUST00000187980ENSMUST00000188275ENSMUST00000188359ENSMUST00000188767ENSMUST00000189019ENSMUST00000189039ENSMUST00000190029ENSMUST00000190121ENSMUST00000190653
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005D0_0001ENSG00000120727ENST00000265192ENST00000394795ENST00000507755ENST00000510080ENST00000510409ENST00000511381ENST00000511706ENSG00000170482ENST00000348729ENST00000353963ENST00000502863ENST00000504513ENST00000506512ENST00000508270ENSG00000199545ENST00000362675ENSG00000200959ENST00000364089ENSG00000252213ENST00000516404ENSG00000253015ENST00000517206ENSG00000272742ENST00000503553CIL_0005D0_0002ENSMUSG00000024354ENSMUST00000025212ENSMUST00000123242ENSMUST00000150877ENSMUST00000153293ENSMUSG00000037058ENSMUST00000041314ENSMUST00000115736ENSMUST00000115737ENSMUSG00000037236ENSMUST00000166793ENSMUST00000186292ENSMUST00000186614ENSMUST00000186796ENSMUST00000187389ENSMUST00000188359ENSMUST00000190029ENSMUST00000190121
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000120727 ENST00000265192 N/A N/A 4.114±0.00 10.794±0.00 2.058±0.00 N/A 3.549±0.00 N/A 4.366±0.00 6.180±0.00 N/A 5.218±2.64 7.258±1.47 N/A
ENST00000394795 N/A N/A N/A N/A N/A N/A N/A 1.268±0.00 N/A N/A N/A N/A N/A N/A
ENST00000507415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.444±0.00
ENST00000510080 32.672±0.00 37.619±0.00 N/A 43.106±35.03 20.470±14.92 11.300±0.00 2.618±0.00 22.107±12.15 13.646±5.48 38.499±0.00 5.183±0.00 30.718±16.84 38.602±14.73 100.613±0.00
ENST00000510409 N/A N/A 2.438±0.00 6.451±0.00 2.841±0.00 3.605±0.00 N/A 4.021±0.00 3.557±0.00 N/A 4.095±0.00 15.727±2.95 32.162±0.00 52.562±0.00
ENST00000511381 40.806±0.00 42.734±0.00 N/A 90.562±0.00 N/A 56.535±0.00 6.582±0.00 52.026±0.00 N/A 10.215±0.00 N/A N/A N/A 98.524±0.00
ENST00000511706 30.893±0.00 30.162±0.00 N/A 91.133±0.00 39.657±0.00 44.676±0.00 N/A N/A N/A 33.355±0.00 N/A N/A N/A 75.982±0.00
ENSG00000170482 ENST00000348729 N/A 0.183±0.00 5.582±0.00 0.363±0.00 0.125±0.00 0.306±0.00 0.099±0.05 2.598±0.00 4.089±0.00 1.590±0.00 N/A 0.786±1.04 0.049±0.01 0.066±0.00
ENST00000353963 N/A N/A N/A N/A N/A N/A N/A 2.393±0.00 N/A N/A N/A 0.612±0.58 0.045±0.01 0.076±0.01
ENST00000502863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.131±0.00 N/A
ENST00000503919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504513 0.202±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.232±0.00 N/A
ENST00000506512 N/A N/A N/A N/A N/A N/A 0.250±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000508270 N/A N/A N/A 0.552±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.194±0.00 0.101±0.00
ENSG00000199545 ENST00000362675 N/A 2.489±0.00 N/A 1.529±0.00 1.913±0.00 1.369±0.00 N/A 0.409±0.00 N/A N/A N/A 1.468±0.00 0.735±0.00 1.529±0.58
ENSG00000200959 ENST00000364089 N/A 0.081±0.00 1.724±0.00 6.933±6.76 18.653±0.00 43.992±0.00 7.001±0.00 18.534±0.00 45.504±0.00 18.609±0.00 25.680±0.00 25.008±33.10 0.288±0.00 0.217±0.07
ENSG00000252213 ENST00000516404 N/A 0.631±0.00 N/A N/A N/A 0.153±0.00 N/A 0.159±0.00 N/A N/A N/A 14.588±0.00 N/A 0.147±0.00
ENSG00000253015 ENST00000517206 0.148±0.00 0.098±0.00 N/A 0.559±0.51 0.098±0.00 N/A 0.301±0.26 0.049±0.00 N/A 1.476±0.00 N/A 0.409±0.00 N/A N/A
ENSG00000272742 ENST00000503553 20.364±0.00 27.503±0.00 5.680±0.00 38.950±8.72 19.795±10.45 20.539±14.93 24.893±18.58 35.034±0.00 11.046±3.08 21.280±9.70 20.269±9.70 26.050±9.44 22.307±0.73 53.514±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024354 ENSMUST00000025212 N/A 0.116±0.04 1.250±0.10 0.296±0.12 0.179±0.07 0.037±0.01 0.059±0.04 18.390±2.00 4.290±2.43 N/A 0.039±0.02 3.514±1.71 3.463±4.26 0.170±0.05
ENSMUST00000123242 N/A 0.151±0.00 N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150877 3.315±2.39 0.144±0.00 1.015±0.48 N/A 0.074±0.00 N/A 0.125±0.00 78.329±25.97 15.175±13.82 4.833±0.93 N/A 7.949±3.14 12.634±2.05 0.704±0.00
ENSMUST00000153293 N/A N/A N/A N/A 0.621±0.13 N/A 0.055±0.00 N/A N/A N/A 0.085±0.00 N/A N/A N/A
ENSMUSG00000037058 ENSMUST00000041314 41.940±2.30 47.582±3.64 96.887±1.09 71.816±34.06 40.704±4.19 31.132±4.71 52.129±2.91 40.931±2.65 47.984±25.45 55.438±3.81 53.192±1.69 55.497±17.97 46.706±19.87 71.490±6.58
ENSMUST00000115734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.947±5.62
ENSMUST00000115737 N/A N/A N/A 119.861±0.00 N/A N/A N/A N/A N/A N/A N/A 261.684±0.00 156.644±13.07 184.593±307.33
ENSMUST00000151126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152312 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037236 ENSMUST00000166793 2.392±1.32 1.475±0.53 2.648±0.00 9.349±0.00 N/A 1.805±0.31 1.284±0.27 1.940±0.47 1.770±1.02 2.779±0.48 N/A 4.324±1.39 N/A 5.170±0.36
ENSMUST00000186158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186292 N/A 1.874±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186614 15.461±7.92 5.157±1.23 20.655±5.43 57.014±0.00 14.245±5.33 5.823±1.02 7.658±0.64 8.956±0.78 5.457±3.06 10.378±1.22 N/A 18.821±3.51 20.191±0.00 26.740±1.71
ENSMUST00000186796 3.761±0.00 2.841±0.00 N/A 95.641±0.00 N/A N/A N/A N/A 2.152±0.38 N/A N/A 35.641±26.05 55.700±14.45 116.093±0.00
ENSMUST00000187389 N/A N/A N/A 35.852±0.00 N/A N/A N/A N/A N/A N/A N/A 35.546±0.00 N/A N/A
ENSMUST00000187543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188359 N/A 6.252±1.68 N/A N/A N/A N/A N/A N/A 5.383±0.55 N/A N/A 15.192±0.00 N/A N/A
ENSMUST00000188767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190029 N/A N/A N/A N/A N/A N/A 4.078±1.20 N/A N/A N/A 5.975±1.74 21.979±5.03 16.330±3.14 90.409±0.00
ENSMUST00000190121 7.838±3.45 4.794±0.00 41.003±4.22 70.213±26.85 9.731±2.35 3.785±0.42 4.382±0.55 7.033±1.51 14.517±12.83 7.448±0.74 7.894±2.68 35.909±12.64 22.213±7.50 15.409±0.28
ENSMUST00000190653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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