C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: iroquois homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000170549 IRX1 9606 + 5:3596054-3601403 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302006 IRX1-001 3596054-3601403 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungPlacentaTestisENST00000302006
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Placenta Testis
ENST00000302006 3.732±0.00 0.129±0.00 0.514±0.00 0.311±0.09 6.006±4.71 0.596±0.53 15.196±0.00 0.091±0.00 1.181±0.16 0.060±0.01 0.329±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OW CIL_0007OW_0001 UCNEbase 5:2112412-4025148
CIL_0008Y1 CIL_0008Y1_0001 VISTA 5:3211864-3813285
CIL_0003O0 CIL_0003O0_0002 CGP 5:3596054-5320304

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001656 IEA metanephros development
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding
GO:0072086 IEA specification of loop of Henle identity
GO:0072272 IEA proximal/distal pattern formation involved in metanephric nephron development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009510 irx1a iroquois homeobox protein 1, a protein_coding Danio_rerio
ENSMUSG00000060969 Irx1 Iroquois related homeobox 1 (Drosophila) protein_coding Mus_musculus

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