C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007OW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
IRXA UCNEbase 9606 5:2112412-4025148
GeneTranscriptPositionBiotype
ENSG00000170549 (IRX1)
iroquois homeobox 1 		ENST00000302006 (IRX1-001) 3596054-3601403 protein_coding
ENSG00000170561 (IRX2)
iroquois homeobox 2 		ENST00000302057 (IRX2-002) 2746766-2751655 protein_coding
ENST00000382611 (IRX2-001) 2745845-2751662 protein_coding
ENSG00000186493 (C5orf38)
chromosome 5 open reading frame 38 		ENST00000334000 (C5orf38-001) 2752148-2755397 protein_coding
ENST00000397835 (C5orf38-007) 2752265-2755376 protein_coding
ENST00000457752 (C5orf38-003) 2752131-2755081 protein_coding
ENST00000503940 (C5orf38-004) 2752228-2755081 nonsense_mediated_decay
ENST00000505106 (C5orf38-002) 2752228-2755081 nonsense_mediated_decay
ENST00000505778 (C5orf38-006) 2752228-2755081 protein_coding
ENST00000515640 (C5orf38-005) 2752246-2754373 protein_coding
ENSG00000248118 (LINC01019)
long intergenic non-protein coding RNA 1019 		ENST00000505443 (LINC01019-001) 3417152-3536094 lincRNA
ENSG00000248137 (RP11-468D11.1)
 ENST00000509745 (RP11-468D11.1-001) 2831021-2835139 lincRNA
ENSG00000248736 (RP11-35O7.1)
 ENST00000515086 (RP11-35O7.1-001) 2965006-2967628 lincRNA
ENSG00000249541 (RP11-692C23.1)
 ENST00000510731 (RP11-692C23.1-001) 2787451-2788549 processed_pseudogene
ENSG00000249808 (LINC01377)
long intergenic non-protein coding RNA 1377 		ENST00000505396 (LINC01377-001) 3178095-3181232 lincRNA
ENSG00000249830 (RP11-121L11.3)
 ENST00000512521 (RP11-121L11.3-001) 3452816-3461660 lincRNA
ENSG00000250716 (LINC01017)
long intergenic non-protein coding RNA 1017 		ENST00000508823 (LINC01017-001) 3496229-3504004 lincRNA
ENSG00000259603 (CTD-2012M11.3)
 ENST00000559410 (CTD-2012M11.3-001) 3596211-3600188 antisense
ENSG00000259757 (RP11-129I19.2)
 ENST00000560688 (RP11-129I19.2-001) 2736662-2737759 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007OW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
IRXA UCNEbase 9606 5:4025149-4805437
GeneTranscriptPositionBiotype
ENSG00000231291 (RP11-445O3.1)
 ENST00000503188 (RP11-445O3.1-001) 4512262-4516776 lincRNA
ENSG00000248973 (RP11-445O3.2)
 ENST00000507435 (RP11-445O3.2-001) 4451930-4866221 lincRNA
ENSG00000249521 (CTD-2161F6.3)
 ENST00000503757 (CTD-2161F6.3-001) 4773481-4774865 lincRNA
ENSG00000249994 (CTD-2383I20.1)
 ENST00000506305 (CTD-2383I20.1-001) 4033713-4041764 lincRNA
ENSG00000250921 (CTD-2008N3.1)
 ENST00000503415 (CTD-2008N3.1-001) 4135682-4143648 lincRNA
ENSG00000251371 (CTD-2318H23.1)
 ENST00000513925 (CTD-2318H23.1-001) 4640731-4648254 lincRNA
ENSG00000260763 (RP11-445O3.3)
 ENST00000562127 (RP11-445O3.3-001) 4436850-4440259 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007OW_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
IRXA UCNEbase 10090 13:71053181-73117527
GeneTranscriptPositionBiotype
ENSMUSG00000001504 (Irx2)
Iroquois related homeobox 2 (Drosophila) 		ENSMUST00000074372 (Irx2-001) 72628820-72634198 protein_coding
ENSMUST00000163393 (Irx2-006) 72632085-72633613 retained_intron
ENSMUST00000167067 (Irx2-005) 72629825-72630880 protein_coding
ENSMUST00000169028 (Irx2-003) 72628971-72630725 processed_transcript
ENSMUST00000172353 (Irx2-004) 72632597-72633770 protein_coding
ENSMUSG00000060969 (Irx1)
Iroquois related homeobox 1 (Drosophila) 		ENSMUST00000077337 (Irx1-001) 71957921-71963723 protein_coding
ENSMUSG00000093587 (Gm20554)
predicted gene, 20554 		ENSMUST00000177421 (Gm20554-001) 72626174-72627013 lincRNA
ENSMUSG00000094989 (Rpl9-ps4)
ribosomal protein L9, pseudogene 4 		ENSMUST00000075549 (Rpl9-ps4-201) 72454762-72455340 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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CIL_0007OW_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
IRXA UCNEbase 7955 16:429462-1090747
GeneTranscriptPositionBiotype
ENSDARG00000001785 (irx2a)
iroquois homeobox protein 2, a 		ENSDART00000016303 (irx2a-001) 565648-570195 protein_coding
ENSDART00000148452 (irx2a-003) 566629-567534 protein_coding
ENSDART00000148602 (irx2a-002) 567672-569146 retained_intron
ENSDARG00000009510 (irx1a)
iroquois homeobox protein 1, a 		ENSDART00000006726 (irx1a-001) 820641-824798 protein_coding
ENSDART00000044190 (irx1a-002) 820650-824806 protein_coding
ENSDART00000082371 (irx1a-201) 820641-824571 protein_coding

Danio rerio Ensembl (Zv9)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007OW_0001ENSG00000170549ENST00000302006ENSG00000170561ENST00000302057ENST00000382611ENSG00000186493ENST00000334000ENST00000397835ENST00000457752ENST00000503940ENST00000505106ENST00000505778ENST00000515640ENSG00000248118ENST00000505443ENSG00000248137ENST00000509745ENSG00000248736ENST00000515086ENSG00000249541ENST00000510731ENSG00000249808ENST00000505396ENSG00000249830ENST00000512521ENSG00000250716ENST00000508823ENSG00000259603ENST00000559410ENSG00000259757ENST00000560688CIL_0007OW_0002ENSG00000231291ENST00000503188ENSG00000248973ENST00000507435ENSG00000249521ENST00000503757ENSG00000249994ENST00000506305ENSG00000250921ENST00000503415ENSG00000251371ENST00000513925ENSG00000260763ENST00000562127CIL_0007OW_0003ENSMUSG00000001504ENSMUST00000074372ENSMUST00000163393ENSMUST00000167067ENSMUST00000169028ENSMUST00000172353ENSMUSG00000060969ENSMUST00000077337ENSMUSG00000093587ENSMUST00000177421ENSMUSG00000094989ENSMUST00000075549CIL_0007OW_0004ENSDARG00000001785ENSDART00000016303ENSDART00000148452ENSDART00000148602ENSDARG00000009510ENSDART00000006726ENSDART00000044190ENSDART00000082371
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007OW_0001ENSG00000170549ENST00000302006ENSG00000170561ENST00000302057ENST00000382611ENSG00000186493ENST00000334000ENST00000397835ENST00000457752ENST00000503940ENST00000505106ENST00000515640ENSG00000248118ENST00000505443ENSG00000248137ENST00000509745ENSG00000248736ENST00000515086ENSG00000249541ENST00000510731ENSG00000249808ENST00000505396ENSG00000249830ENST00000512521ENSG00000250716ENST00000508823ENSG00000259603ENST00000559410ENSG00000259757ENST00000560688CIL_0007OW_0002ENSG00000231291ENST00000503188ENSG00000248973ENST00000507435ENSG00000249521ENST00000503757ENSG00000249994ENST00000506305ENSG00000250921ENST00000503415ENSG00000251371ENST00000513925ENSG00000260763ENST00000562127CIL_0007OW_0003ENSMUSG00000001504ENSMUST00000074372ENSMUST00000163393ENSMUST00000167067ENSMUST00000169028ENSMUST00000172353ENSMUSG00000060969ENSMUST00000077337ENSMUSG00000093587ENSMUST00000177421ENSMUSG00000094989ENSMUST00000075549CIL_0007OW_0004ENSDARG00000001785ENSDART00000016303ENSDART00000148452ENSDART00000148602ENSDARG00000009510ENSDART00000006726
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000170549 ENST00000302006 3.732±0.00 0.129±0.00 0.514±0.00 0.311±0.09 6.006±4.71 N/A 0.596±0.53 15.196±0.00 0.091±0.00 1.181±0.16 N/A N/A 0.060±0.01 0.329±0.26
ENSG00000170561 ENST00000302057 0.391±0.00 N/A 1.028±0.00 0.048±0.00 0.294±0.00 N/A 0.956±0.79 3.234±0.00 N/A 1.471±0.00 0.032±0.00 0.102±0.09 3.493±1.05 0.950±0.00
ENST00000382611 0.920±0.00 0.085±0.00 N/A 0.072±0.00 3.689±0.00 0.096±0.00 1.376±1.35 8.025±0.00 0.019±0.00 3.378±0.00 N/A 0.205±0.20 6.297±3.56 1.021±0.63
ENSG00000186493 ENST00000334000 N/A N/A N/A N/A 1.408±0.00 N/A 0.397±0.00 N/A N/A 0.532±0.00 N/A 0.429±0.00 1.590±0.00 0.891±0.00
ENST00000397835 0.987±0.00 N/A N/A 0.181±0.00 2.687±0.00 N/A N/A 4.610±0.00 N/A 6.795±0.00 N/A 0.205±0.12 1.787±0.29 0.404±0.00
ENST00000457752 1.946±0.00 0.363±0.00 N/A N/A 5.709±0.00 N/A 2.305±0.00 N/A N/A N/A N/A 9.531±9.22 9.430±5.47 1.974±0.00
ENST00000503940 N/A N/A N/A N/A N/A 0.088±0.00 N/A N/A N/A N/A N/A 0.108±0.00 N/A N/A
ENST00000505106 N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515640 0.838±0.00 0.016±0.00 0.888±0.00 0.091±0.00 0.647±0.61 N/A 0.284±0.00 2.447±0.00 N/A 0.347±0.00 N/A 1.125±1.09 0.854±0.51 0.719±0.37
ENSG00000248118 ENST00000505443 0.017±0.00 N/A N/A N/A N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A 0.963±0.41
ENSG00000248137 ENST00000509745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00
ENSG00000248736 ENST00000515086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.298±0.09
ENSG00000249541 ENST00000510731 N/A N/A N/A N/A 0.010±0.00 N/A N/A 0.010±0.00 0.009±0.00 N/A N/A N/A N/A N/A
ENSG00000249808 ENST00000505396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.277±3.92
ENSG00000249830 ENST00000512521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.377±0.12
ENSG00000250716 ENST00000508823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.00
ENSG00000259603 ENST00000559410 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.210±0.00 N/A N/A N/A 0.227±0.00
ENSG00000259757 ENST00000560688 N/A N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A 0.083±0.00 N/A N/A N/A 0.095±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000231291 ENST00000503188 0.007±0.00 0.020±0.00 N/A 0.007±0.00 N/A N/A 0.006±0.00 0.059±0.00 N/A N/A 0.018±0.00 0.005±0.00 N/A 0.025±0.01
ENSG00000248973 ENST00000507435 0.096±0.00 0.137±0.00 N/A 0.101±0.00 0.019±0.00 0.035±0.00 N/A 0.019±0.00 N/A 0.034±0.00 N/A N/A 0.136±0.01 0.888±0.00
ENSG00000249521 ENST00000503757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.02 0.833±0.05
ENSG00000249994 ENST00000506305 0.197±0.00 0.451±0.00 N/A 0.635±0.00 0.543±0.00 0.126±0.00 0.234±0.00 0.484±0.00 N/A N/A 0.053±0.00 0.060±0.00 0.031±0.00 0.038±0.02
ENSG00000250921 ENST00000503415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.153±0.05
ENSG00000251371 ENST00000513925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.359±0.09
ENSG00000260763 ENST00000562127 0.041±0.00 0.099±0.00 N/A 0.029±0.00 0.053±0.00 0.047±0.00 0.034±0.00 0.092±0.00 0.017±0.00 0.039±0.00 0.040±0.00 0.020±0.00 N/A 0.061±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001504 ENSMUST00000074372 0.011±0.00 0.057±0.02 0.281±0.15 13.339±4.05 16.404±10.60 0.035±0.03 1.442±0.42 7.617±1.57 0.021±0.01 32.638±8.72 0.072±0.07 0.099±0.04 1.000±0.16 0.499±0.07
ENSMUST00000163393 N/A N/A N/A N/A 3.645±0.00 N/A N/A N/A 0.031±0.02 N/A N/A N/A N/A N/A
ENSMUST00000167067 0.093±0.00 N/A N/A N/A N/A N/A N/A N/A 0.057±0.03 N/A 0.386±0.14 0.189±0.07 N/A N/A
ENSMUST00000169028 0.082±0.00 N/A N/A N/A 20.775±5.22 0.154±0.00 N/A 7.023±0.00 0.190±0.00 N/A N/A 0.354±0.22 N/A N/A
ENSMUST00000172353 N/A N/A N/A N/A 17.156±0.00 N/A N/A N/A 0.039±0.00 N/A 0.144±0.00 0.067±0.00 7.881±3.49 N/A
ENSMUSG00000060969 ENSMUST00000077337 0.078±0.06 0.029±0.01 0.017±0.01 5.904±3.93 23.996±14.35 0.012±0.00 2.224±0.46 17.064±2.91 0.097±0.05 55.706±23.54 0.063±0.02 0.058±0.03 0.532±0.21 0.414±0.41
ENSMUSG00000093587 ENSMUST00000177421 0.080±0.01 0.327±0.11 0.046±0.00 2.214±0.00 6.003±1.49 0.175±0.01 0.115±0.03 1.145±0.22 0.086±0.03 3.269±1.37 0.078±0.04 0.390±0.19 0.214±0.18 0.301±0.15
ENSMUSG00000094989 ENSMUST00000075549 0.605±0.32 0.443±0.20 4.610±3.82 2.753±2.26 0.636±0.30 0.477±0.15 0.452±0.14 0.304±0.18 4.211±6.74 0.242±0.15 0.236±0.11 0.510±0.32 0.139±0.08 0.238±0.20
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000001785 ENSDART00000016303 N/A N/A N/A 2.370±1.71 N/A N/A 10.571±12.71 2.121±1.25 N/A N/A 0.437±0.00 N/A N/A N/A
ENSDART00000148452 N/A N/A N/A 0.944±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000148602 N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A N/A N/A N/A N/A
ENSDARG00000009510 ENSDART00000006726 N/A N/A N/A 3.622±3.43 N/A N/A 25.183±17.39 2.697±0.00 0.111±0.00 N/A 1.651±0.00 N/A N/A N/A
ENSDART00000044190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000082371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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