C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: iroquois homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000302006 IRX1-001 ENSG00000170549 9606 + 5:3596054-3601403 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungPlacentaTestisENST00000302006
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Placenta Testis
ENST00000302006 3.732±0.00 0.129±0.00 0.514±0.00 0.311±0.09 6.006±4.71 0.596±0.53 15.196±0.00 0.091±0.00 1.181±0.16 0.060±0.01 0.329±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OW CIL_0007OW_0001 UCNEbase 5:2112412-4025148
CIL_0008Y1 CIL_0008Y1_0001 VISTA 5:3211864-3813285
CIL_0003O0 CIL_0003O0_0002 CGP 5:3596054-5320304

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001656 IEA metanephros development
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding
GO:0072086 IEA specification of loop of Henle identity
GO:0072272 IEA proximal/distal pattern formation involved in metanephric nephron development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077337 Irx1-001 protein_coding Mus_musculus 0 1762
ENSDART00000044190 irx1a-002 protein_coding Danio_rerio 0 453
ENSDART00000006726 irx1a-001 protein_coding Danio_rerio 0 453
ENSMUST00000175795 Irx3-001 protein_coding Mus_musculus 0 353
ENSMUST00000093312 Irx3-002 protein_coding Mus_musculus 0 353
ENSMUST00000167261 Irx6-002 protein_coding Mus_musculus 0 274
ENSMUST00000034185 Irx6-001 protein_coding Mus_musculus 0 274
ENSMUST00000022095 Irx4-001 protein_coding Mus_musculus 0 241
ENSMUST00000176684 Irx4-002 protein_coding Mus_musculus 0 241
ENSMUST00000034184 Irx5-001 protein_coding Mus_musculus 0 239
ENSDART00000042271 irx3b-001 protein_coding Danio_rerio 0 235
ENSMUST00000167067 Irx2-005 protein_coding Mus_musculus 0 220
ENSMUST00000074372 Irx2-001 protein_coding Mus_musculus 0 220
ENSDART00000148951 irx4a-002 retained_intron Danio_rerio 0 211
ENSDART00000051693 irx4a-001 protein_coding Danio_rerio 0 211
ENSDART00000113480 irx3a-202 protein_coding Danio_rerio 1.4013e-45 189
ENSDART00000074895 irx3a-201 protein_coding Danio_rerio 1.4013e-45 189
ENSDART00000036147 irx5b-001 protein_coding Danio_rerio 4.06377e-44 183
ENSDART00000148602 irx2a-002 retained_intron Danio_rerio 3e-40 171
ENSDART00000016303 irx2a-001 protein_coding Danio_rerio 3e-40 171
ENSDART00000043857 irx5a-001 protein_coding Danio_rerio 2e-36 158

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