C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TSEN34 tRNA splicing endonuclease subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396388 TSEN34-004 ENSG00000170892 9606 + 19:54191253-54193666 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396388
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396388 13.683±0.00 11.543±0.00 1.499±0.00 4.916±3.19 8.136±6.03 10.450±8.91 4.637±4.19 12.163±8.54 6.512±4.24 15.281±12.08 8.947±8.49 28.148±21.89 27.679±16.60 16.300±5.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005M7 CIL_0005M7_0001 CGP 19:54173412-54194536
CIL_0005M6 CIL_0005M6_0001 CGP 19:54189938-54249003

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000213 IEA tRNA-intron endonuclease activity
GO:0000214 IEA tRNA-intron endonuclease complex
GO:0000379 IEA tRNA-type intron splice site recognition and cleavage
GO:0003676 IEA nucleic acid binding
GO:0006388 IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing
GO:0016829 IEA lyase activity
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038521 Tsen34-002 protein_coding Mus_musculus 0 918
ENSMUST00000108627 Tsen34-004 protein_coding Mus_musculus 0 894
ENSMUST00000108630 Tsen34-001 protein_coding Mus_musculus 0 885
ENSMUST00000142461 4930526A20Rik-002 processed_transcript Mus_musculus 0 854
ENSMUST00000134228 4930526A20Rik-001 transcribed_processed_pseudogene Mus_musculus 0 824
ENSMUST00000155060 Tsen34-009 nonsense_mediated_decay Mus_musculus 0 767
ENSMUST00000108629 Tsen34-003 protein_coding Mus_musculus 0 701
ENSMUST00000142713 Tsen34-007 protein_coding Mus_musculus 0 451
ENSMUST00000123088 Tsen34-006 protein_coding Mus_musculus 0 438
ENSMUST00000137204 Tsen34-008 protein_coding Mus_musculus 0 390

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