C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: keratin 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171401 KRT13 9606 - 17:41500981-41505705 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000246635 KRT13-001 41500981-41505597 protein_coding
  ENST00000336861 KRT13-002 41500981-41505597 protein_coding
  ENST00000464634 KRT13-006 41502250-41505612 nonsense_mediated_decay
  ENST00000468313 KRT13-003 41500990-41505597 retained_intron
  ENST00000475217 KRT13-004 41500982-41501911 processed_transcript
  ENST00000587118 KRT13-009 41503659-41504576 processed_transcript
  ENST00000587435 KRT13-008 41503069-41505613 protein_coding
  ENST00000587544 KRT13-005 41502225-41505613 protein_coding
  ENST00000590425 KRT13-007 41503018-41505705 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000246635ENST00000336861ENST00000464634ENST00000475217ENST00000587118ENST00000587435ENST00000587544ENST00000590425
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000246635 2.378±0.00 N/A N/A N/A N/A N/A 2.356±0.00 N/A N/A 67.462±77.43 N/A
ENST00000336861 N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A N/A 0.254±0.00
ENST00000464634 1.685±0.00 N/A N/A 0.065±0.02 N/A 0.090±0.00 N/A N/A 2.096±0.00 232.621±232.51 0.268±0.00
ENST00000475217 N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587118 N/A N/A N/A N/A N/A 0.526±0.00 N/A N/A N/A N/A N/A
ENST00000587435 N/A 0.019±0.00 N/A N/A N/A 0.545±0.00 N/A N/A N/A 986.878±907.31 N/A
ENST00000587544 N/A 0.026±0.00 N/A N/A N/A N/A N/A 20.665±0.00 N/A 67.743±0.00 N/A
ENST00000590425 N/A N/A N/A N/A 0.079±0.00 N/A N/A N/A N/A 1045.160±0.00 0.628±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000C CGP 17:41486136-41505705
CIL_00056U CIL_00056U_000I CGP 17:41500981-41522529

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005882 IEA intermediate filament
GO:0007010 IDA cytoskeleton organization
GO:0009314 IEA response to radiation
GO:0043587 IEA tongue morphogenesis
GO:0045095 IDA keratin filament
GO:0045111 IDA intermediate filament cytoskeleton
GO:0070062 IDA extracellular vesicular exosome
GO:0071300 IEA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000212 zgc:92061 zgc:92061 protein_coding Danio_rerio
ENSDARG00000014356 zgc:92035 zgc:92035 protein_coding Danio_rerio
ENSDARG00000022334 BX469912.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000023082 krt1-19d keratin, type 1, gene 19d protein_coding Danio_rerio
ENSDARG00000036832 cyt1l type I cytokeratin, enveloping layer, like protein_coding Danio_rerio
ENSDARG00000036834 zgc:109868 zgc:109868 protein_coding Danio_rerio
ENSDARG00000036840 krt15 keratin 15 protein_coding Danio_rerio
ENSDARG00000044975 zgc:153629 zgc:153629 protein_coding Danio_rerio
ENSDARG00000044976 zgc:136902 zgc:136902 protein_coding Danio_rerio
ENSDARG00000090268 si:dkeyp-113d7.4 si:dkeyp-113d7.4 protein_coding Danio_rerio
ENSDARG00000092947 cyt1 type I cytokeratin, enveloping layer protein_coding Danio_rerio
ENSDARG00000094041 krt17 keratin 17 protein_coding Danio_rerio
ENSDARG00000095147 wu:fb17f05 wu:fb17f05 protein_coding Danio_rerio
ENSMUSG00000044041 Krt13 keratin 13 protein_coding Mus_musculus

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