C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000246635 KRT13-001 ENSG00000171401 9606 - 17:41500981-41505597 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeKidneyOvaryENST00000246635
Transcript ID Adipose Kidney Ovary
ENST00000246635 2.378±0.00 2.356±0.00 67.462±77.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000C CGP 17:41486136-41505705
CIL_00056U CIL_00056U_000I CGP 17:41500981-41522529

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005882 IEA intermediate filament
GO:0007010 IDA cytoskeleton organization
GO:0009314 IEA response to radiation
GO:0043587 IEA tongue morphogenesis
GO:0045095 IDA keratin filament
GO:0045111 IDA intermediate filament cytoskeleton
GO:0070062 IDA extracellular vesicular exosome
GO:0071300 IEA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007275 Krt13-001 protein_coding Mus_musculus 0 1362
ENSMUST00000107411 Krt15-001 protein_coding Mus_musculus 0 1020
ENSMUST00000017270 Krt42-001 protein_coding Mus_musculus 0 612
ENSMUST00000007317 Krt19-001 protein_coding Mus_musculus 0 566
ENSMUST00000128934 Krt13-002 processed_transcript Mus_musculus 0 558
ENSMUST00000126460 Krt19-002 processed_transcript Mus_musculus 0 433
ENSMUST00000103131 Krt10-001 protein_coding Mus_musculus 0 278
ENSMUST00000017741 Krt12-001 protein_coding Mus_musculus 0 213
ENSMUST00000125888 Krt19-003 processed_transcript Mus_musculus 0 198
ENSMUST00000134282 Krt13-003 retained_intron Mus_musculus 6e-32 143

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