C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calsyntenin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377298 CLSTN1-001 ENSG00000171603 9606 - 1:9729026-9824526 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverMuscleOvaryPlacentaENST00000377298
Transcript ID Brain Breast Heart Liver Muscle Ovary Placenta
ENST00000377298 6.890±0.00 2.788±0.00 3.336±1.16 4.912±0.00 0.549±0.00 17.740±0.00 21.041±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IDA beta-amyloid binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019894 IPI kinesin binding
GO:0030054 IEA cell junction
GO:0042988 IPI X11-like protein binding
GO:0042995 IEA cell projection
GO:0045211 IEA postsynaptic membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039144 Clstn1-002 protein_coding Mus_musculus 0 3140
ENSMUST00000105691 Clstn1-001 protein_coding Mus_musculus 0 2859
ENSMUST00000151895 Clstn1-004 retained_intron Mus_musculus 0 795
ENSMUST00000137232 Clstn1-003 processed_transcript Mus_musculus 0 350

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