C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calsyntenin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361311 CLSTN1-002 ENSG00000171603 9606 - 1:9729028-9823984 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361311
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361311 18.265±0.00 13.263±0.00 7.322±0.00 60.849±24.26 8.848±1.71 12.665±6.60 7.473±6.38 25.028±0.00 3.196±1.96 11.872±5.66 9.655±7.51 29.956±15.11 38.027±14.47 12.832±4.64

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IDA beta-amyloid binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0019894 IPI kinesin binding
GO:0030054 IEA cell junction
GO:0042988 IPI X11-like protein binding
GO:0042995 IEA cell projection
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105691 Clstn1-001 protein_coding Mus_musculus 0 3142
ENSMUST00000039144 Clstn1-002 protein_coding Mus_musculus 0 2802
ENSMUST00000151895 Clstn1-004 retained_intron Mus_musculus 0 797
ENSMUST00000137232 Clstn1-003 processed_transcript Mus_musculus 5e-37 161

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