C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain PHD finger transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306378 BPTF-002 ENSG00000171634 9606 + 17:67825665-67983153 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306378
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306378 2.468±0.00 1.977±0.00 1.127±0.00 2.892±0.00 3.314±0.31 3.259±0.79 2.326±0.00 1.810±1.36 2.288±1.06 2.008±0.39 1.391±0.36 2.686±0.61 2.259±1.11 7.110±0.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001892 IEA embryonic placenta development
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006200 IDA ATP catabolic process
GO:0006338 IDA chromatin remodeling
GO:0006351 IMP transcription, DNA-templated
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0007010 IEA cytoskeleton organization
GO:0007420 IMP brain development
GO:0007492 IEA endoderm development
GO:0008094 IDA DNA-dependent ATPase activity
GO:0008134 IDA transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0009952 IEA anterior/posterior pattern specification
GO:0015630 IDA microtubule cytoskeleton
GO:0016589 IDA NURF complex
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 IMP positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057892 Bptf-201 protein_coding Mus_musculus 0 8776
ENSMUST00000106762 Bptf-002 protein_coding Mus_musculus 0 5915
ENSMUST00000106763 Bptf-001 protein_coding Mus_musculus 0 5915
ENSMUST00000149486 Bptf-003 protein_coding Mus_musculus 0 540
ENSMUST00000147816 Bptf-006 processed_transcript Mus_musculus 0 453
ENSMUST00000138443 Bptf-005 processed_transcript Mus_musculus 0 394
ENSDART00000109601 bptf-201 protein_coding Danio_rerio 0 257
ENSDART00000154200 bptf-001 protein_coding Danio_rerio 0 257

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