C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type VIII, alpha 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171812 COL8A2 9606 - 1:36095236-36125220 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303143 COL8A2-001 36095236-36100249 protein_coding
  ENST00000397799 COL8A2-003 36095236-36125220 protein_coding
  ENST00000481785 COL8A2-002 36097507-36100249 protein_coding
  ENST00000615990 COL8A2-201 36097507-36100249 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000303143ENST00000397799
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000303143 N/A 4.042±0.00 0.967±0.00 2.057±1.89 0.580±0.41 N/A 0.382±0.00 2.335±0.00 N/A 2.069±2.26 5.258±0.43 3.718±0.00
ENST00000397799 0.869±0.00 N/A N/A N/A N/A 0.627±0.00 N/A N/A 1.596±0.00 N/A 2.887±0.42 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JJ CIL_0004JJ_0002 CGP 1:36095236-36156053

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005201 NAS extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005576 IEA:TAS extracellular region
GO:0005578 NAS proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005604 NAS basement membrane
GO:0005788 TAS endoplasmic reticulum lumen
GO:0016337 NAS single organismal cell-cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 NAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0030674 NAS protein binding, bridging
GO:0031012 IDA extracellular matrix
GO:0048593 IEA camera-type eye morphogenesis
GO:0050673 IEA epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060893 col8a2 collagen, type VIII, alpha 2 protein_coding Danio_rerio
ENSMUSG00000056174 Col8a2 collagen, type VIII, alpha 2 protein_coding Mus_musculus

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