C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA methyltransferase like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171861 RNMTL1 9606 + 17:782273-792509 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000304478 RNMTL1-001 782273-792509 protein_coding
  ENST00000571157 RNMTL1-003 782600-788198 protein_coding
  ENST00000574509 RNMTL1-004 782367-791766 nonsense_mediated_decay
  ENST00000574916 RNMTL1-002 782358-783517 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304478ENST00000574509ENST00000574916
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304478 5.590±0.00 11.118±0.00 5.231±2.51 5.419±4.20 9.922±0.00 5.892±4.44 5.635±0.00 8.755±0.00 7.837±4.50 9.170±1.30 16.910±0.20
ENST00000574509 N/A N/A N/A N/A N/A N/A N/A 4.104±0.00 N/A N/A N/A
ENST00000574916 N/A N/A N/A N/A N/A N/A N/A 3.554±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AM CIL_0006AM_0002 CGP 17:757097-792509
CIL_0006AF CIL_0006AF_0002 CGP 17:782273-979770

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001510 IEA RNA methylation
GO:0003723 IEA RNA binding
GO:0005739 IEA mitochondrion
GO:0006396 IEA RNA processing
GO:0008168 IEA methyltransferase activity
GO:0008173 IEA RNA methyltransferase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016543 rnmtl1a RNA methyltransferase like 1a protein_coding Danio_rerio
ENSDARG00000069082 rnmtl1b RNA methyltransferase like 1b protein_coding Danio_rerio
ENSMUSG00000038046 Rnmtl1 RNA methyltransferase like 1 protein_coding Mus_musculus

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