C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysocardiolipin acyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172954 LCLAT1 9606 + 2:30447226-30644225 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309052 LCLAT1-001 30447257-30644225 protein_coding
  ENST00000319406 LCLAT1-002 30447243-30607845 protein_coding
  ENST00000379509 LCLAT1-006 30447236-30644224 protein_coding
  ENST00000465200 LCLAT1-011 30447236-30562190 protein_coding
  ENST00000465538 LCLAT1-012 30447256-30533319 protein_coding
  ENST00000466477 LCLAT1-010 30447226-30552549 protein_coding
  ENST00000476038 LCLAT1-013 30447276-30568167 protein_coding
  ENST00000476535 LCLAT1-004 30447403-30562193 protein_coding
  ENST00000478015 LCLAT1-008 30447273-30640830 nonsense_mediated_decay
  ENST00000488144 LCLAT1-005 30447249-30533266 protein_coding
  ENST00000491680 LCLAT1-007 30447246-30640947 processed_transcript
  ENST00000497423 LCLAT1-003 30447388-30533297 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000309052ENST00000319406ENST00000379509ENST00000476535ENST00000491680
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000309052 N/A 0.560±0.00 N/A 0.880±0.00 N/A N/A 1.632±0.00 N/A 0.676±0.00 N/A 0.810±0.00 N/A 1.087±0.00
ENST00000319406 N/A 1.212±0.00 N/A 0.694±0.00 0.439±0.00 N/A 1.201±0.00 0.637±0.00 0.420±0.00 N/A 0.533±0.13 N/A 0.787±0.00
ENST00000379509 0.508±0.00 1.729±0.00 1.762±0.00 0.740±0.46 1.173±0.78 2.273±0.98 3.576±0.61 2.700±0.66 0.805±0.05 1.400±0.10 1.868±0.98 0.557±0.18 5.049±0.00
ENST00000476535 N/A N/A N/A 6.728±0.00 6.747±0.00 N/A N/A N/A 5.686±0.00 3.663±0.00 7.114±0.00 N/A N/A
ENST00000491680 N/A N/A 1.223±0.00 0.920±0.00 N/A N/A N/A N/A 1.027±0.00 N/A 1.640±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099K CIL_00099K_0001 VISTA 2:30059340-30663789
CIL_0000VG CIL_0000VG_0001 CGP 2:30231531-30644225
CIL_0000VF CIL_0000VF_0001 CGP 2:30447226-30820542

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003841 IEA 1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0005783 IEA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006654 TAS phosphatidic acid biosynthetic process
GO:0007275 IEA multicellular organismal development
GO:0008152 IEA metabolic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016024 IEA CDP-diacylglycerol biosynthetic process
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0019432 TAS triglyceride biosynthetic process
GO:0035965 TAS cardiolipin acyl-chain remodeling
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000054469 Lclat1 lysocardiolipin acyltransferase 1 protein_coding Mus_musculus

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