C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 2A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398645 KDM2A-001 ENSG00000173120 9606 + 11:67119269-67257665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000398645
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000398645 3.330±0.00 1.369±0.00 2.312±0.00 3.840±0.00 2.029±0.00 1.662±0.00 2.312±0.00 4.047±0.00 1.627±0.14 3.183±1.26 2.226±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0051864 IEA histone demethylase activity (H3-K36 specific)
GO:0055114 IEA oxidation-reduction process
GO:0070544 IMP histone H3-K36 demethylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075856 Kdm2a-201 protein_coding Mus_musculus 0 3727
ENSMUST00000047898 Kdm2a-001 protein_coding Mus_musculus 0 3325
ENSMUST00000116571 Kdm2a-005 protein_coding Mus_musculus 0 2577
ENSMUST00000175777 Kdm2a-004 retained_intron Mus_musculus 0 1797
ENSMUST00000175682 Kdm2a-003 retained_intron Mus_musculus 0 1528
ENSMUST00000175959 Kdm2a-007 protein_coding Mus_musculus 0 1011
ENSMUST00000176653 Kdm2a-008 protein_coding Mus_musculus 0 959
ENSMUST00000176532 Kdm2a-010 nonsense_mediated_decay Mus_musculus 0 756
ENSMUST00000175978 Kdm2a-009 retained_intron Mus_musculus 0 691
ENSMUST00000176483 Kdm2a-006 protein_coding Mus_musculus 0 564
ENSMUST00000176495 Kdm2a-002 retained_intron Mus_musculus 0 560
ENSMUST00000176497 Kdm2a-011 nonsense_mediated_decay Mus_musculus 3e-40 172

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