C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: VANGL planar cell polarity protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173218 VANGL1 9606 + 1:115641953-115698224 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310260 VANGL1-003 115642629-115691854 protein_coding
  ENST00000355485 VANGL1-201 115641953-115698224 protein_coding
  ENST00000369509 VANGL1-002 115651402-115691854 protein_coding
  ENST00000369510 VANGL1-001 115641991-115698224 protein_coding
  ENST00000474344 VANGL1-005 115671144-115684076 processed_transcript
  ENST00000478369 VANGL1-004 115671045-115684076 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310260ENST00000355485ENST00000369509ENST00000369510
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310260 N/A N/A N/A N/A 1.334±0.00 N/A N/A 1.345±0.00 N/A 0.694±0.24 N/A N/A N/A N/A
ENST00000355485 N/A 1.117±0.00 0.212±0.00 0.169±0.00 0.913±0.00 1.413±0.00 1.016±0.00 2.152±0.00 0.975±0.40 N/A N/A 1.275±0.52 0.544±0.09 0.331±0.00
ENST00000369509 1.088±0.00 N/A 1.136±0.00 0.487±0.00 N/A 2.833±0.00 0.670±0.06 N/A 1.508±0.83 N/A 0.179±0.00 3.048±1.42 1.844±1.39 4.839±0.00
ENST00000369510 N/A N/A N/A N/A N/A N/A 0.145±0.00 0.289±0.00 N/A N/A 0.065±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HI CIL_0008HI_0001 VISTA 1:115492363-116093752

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007275 IEA multicellular organismal development
GO:0016021 IEA integral component of membrane
GO:0016328 IEA lateral plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004305 vangl1 vang-like 1 (van gogh, Drosophila) protein_coding Danio_rerio
ENSMUSG00000027860 Vangl1 vang-like 1 (van gogh, Drosophila) protein_coding Mus_musculus

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