C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vang-like 1 (van gogh, Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027860 Vangl1 10090 - 3:102156701-102204693 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029453 Vangl1-002 102158180-102203963 protein_coding
  ENSMUST00000159388 Vangl1-001 102156701-102204693 protein_coding
  ENSMUST00000159586 Vangl1-004 102184356-102197905 protein_coding
  ENSMUST00000160226 Vangl1-007 102163186-102166973 retained_intron
  ENSMUST00000161021 Vangl1-006 102158180-102166930 protein_coding
  ENSMUST00000161722 Vangl1-003 102196831-102203881 protein_coding
  ENSMUST00000162361 Vangl1-005 102163363-102165940 processed_transcript
  ENSMUST00000168312 Vangl1-201 102158183-102203963 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159388ENSMUST00000160226ENSMUST00000161021ENSMUST00000162361ENSMUST00000168312
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159388 7.807±4.28 9.409±0.82 7.669±0.62 2.642±1.15 6.165±2.05 8.409±0.51 2.214±0.36 7.940±0.93 4.850±3.86 7.628±1.96 0.222±0.08 10.463±3.85 3.150±2.31 0.284±0.21
ENSMUST00000160226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.843±0.00 5.583±0.26 N/A
ENSMUST00000161021 N/A N/A N/A N/A N/A N/A N/A N/A 8.828±0.14 N/A N/A N/A 2.497±0.00 0.475±0.00
ENSMUST00000162361 N/A N/A N/A 3.682±0.00 N/A N/A N/A N/A 40.779±20.03 N/A N/A 22.373±0.00 10.756±2.18 1.115±0.00
ENSMUST00000168312 N/A N/A N/A 0.275±0.00 N/A N/A N/A N/A N/A N/A N/A 1.516±0.00 N/A 0.062±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HI CIL_0008HI_0002 VISTA 3:101762054-102363652

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007275 IEA multicellular organismal development
GO:0016021 ISS integral component of membrane
GO:0016328 IDA lateral plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004305 vangl1 vang-like 1 (van gogh, Drosophila) protein_coding Danio_rerio
ENSG00000173218 VANGL1 VANGL planar cell polarity protein 1 protein_coding Homo_sapiens

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