C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: VANGL planar cell polarity protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369509 VANGL1-002 ENSG00000173218 9606 + 1:115651402-115691854 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartLiverMuscleOvaryPlacentaTestisENST00000369509
Transcript ID Adipose Bladder Brain Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000369509 1.088±0.00 1.136±0.00 0.487±0.00 2.833±0.00 0.670±0.06 1.508±0.83 0.179±0.00 3.048±1.42 1.844±1.39 4.839±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HI CIL_0008HI_0001 VISTA 1:115492363-116093752

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007275 IEA multicellular organismal development
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159388 Vangl1-001 protein_coding Mus_musculus 0 2226
ENSMUST00000168312 Vangl1-201 protein_coding Mus_musculus 0 1266
ENSMUST00000029453 Vangl1-002 protein_coding Mus_musculus 0 1266
ENSMUST00000161021 Vangl1-006 protein_coding Mus_musculus 0 856
ENSMUST00000160226 Vangl1-007 retained_intron Mus_musculus 0 656
ENSMUST00000159586 Vangl1-004 protein_coding Mus_musculus 0 507
ENSMUST00000162361 Vangl1-005 processed_transcript Mus_musculus 0 366

Loading