C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: VANGL planar cell polarity protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355485 VANGL1-201 ENSG00000173218 9606 + 1:115641953-115698224 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000355485
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000355485 1.117±0.00 0.212±0.00 0.169±0.00 0.913±0.00 1.413±0.00 1.016±0.00 2.152±0.00 0.975±0.40 1.275±0.52 0.544±0.09 0.331±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HI CIL_0008HI_0001 VISTA 1:115492363-116093752

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007275 IEA multicellular organismal development
GO:0016021 IEA integral component of membrane
GO:0016328 IEA lateral plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159388 Vangl1-001 protein_coding Mus_musculus 0 2316
ENSMUST00000168312 Vangl1-201 protein_coding Mus_musculus 0 1275
ENSMUST00000029453 Vangl1-002 protein_coding Mus_musculus 0 1275
ENSMUST00000161021 Vangl1-006 protein_coding Mus_musculus 0 856
ENSMUST00000160226 Vangl1-007 retained_intron Mus_musculus 0 656
ENSMUST00000159586 Vangl1-004 protein_coding Mus_musculus 0 516
ENSMUST00000162361 Vangl1-005 processed_transcript Mus_musculus 0 366

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