C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ArfGAP with FG repeats 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173744 AGFG1 9606 + 2:227472152-227561214 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310078 AGFG1-001 227472162-227561214 protein_coding
  ENST00000373671 AGFG1-002 227472372-227554545 protein_coding
  ENST00000409171 AGFG1-005 227472372-227554545 protein_coding
  ENST00000409315 AGFG1-004 227472369-227555728 protein_coding
  ENST00000409979 AGFG1-003 227472152-227554559 protein_coding
  ENST00000456594 AGFG1-006 227508272-227533681 protein_coding
  ENST00000458212 AGFG1-008 227536955-227554912 protein_coding
  ENST00000486932 AGFG1-007 227510721-227524904 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310078ENST00000409171ENST00000409315ENST00000409979ENST00000458212ENST00000486932
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310078 5.601±0.00 1.846±0.00 N/A 3.313±0.00 4.730±0.88 0.721±0.09 0.736±0.28 3.159±0.00 1.271±0.51 1.841±0.05 0.567±0.00 3.769±0.75 3.969±1.76 7.993±3.56
ENST00000409171 15.129±0.00 9.068±0.00 2.337±0.00 N/A 12.486±0.00 5.841±0.00 N/A 5.115±0.00 2.636±0.00 8.524±2.27 N/A 6.903±1.33 10.812±0.37 14.327±0.00
ENST00000409315 4.083±0.00 N/A N/A N/A N/A 1.316±0.00 1.467±0.00 3.456±0.00 1.297±0.00 2.753±0.00 N/A N/A 5.364±0.04 7.713±0.00
ENST00000409979 N/A N/A N/A N/A N/A N/A 4.076±1.93 N/A N/A N/A 3.119±1.22 N/A N/A N/A
ENST00000458212 N/A N/A N/A N/A N/A 6.681±0.00 6.098±0.00 7.868±0.00 4.789±0.00 10.700±0.00 N/A N/A 11.479±0.89 N/A
ENST00000486932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.753±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076V CIL_00076V_0001 CGP 2:227362156-227561214

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001675 IEA acrosome assembly
GO:0003677 IEA DNA binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005643 TAS nuclear pore
GO:0006406 TAS mRNA export from nucleus
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0007289 IEA spermatid nucleus differentiation
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0016023 IEA cytoplasmic membrane-bounded vesicle
GO:0030154 IEA cell differentiation
GO:0031410 IEA cytoplasmic vesicle
GO:0032312 IEA regulation of ARF GTPase activity
GO:0042995 IEA cell projection
GO:0043025 IEA neuronal cell body
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043547 IEA positive regulation of GTPase activity
GO:0045109 IEA intermediate filament organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019526 agfg1b ArfGAP with FG repeats 1b protein_coding Danio_rerio
ENSMUSG00000026159 Agfg1 ArfGAP with FG repeats 1 protein_coding Mus_musculus

Loading