C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ArfGAP with FG repeats 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409171 AGFG1-005 ENSG00000173744 9606 + 2:227472372-227554545 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000409171
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000409171 15.129±0.00 9.068±0.00 2.337±0.00 12.486±0.00 5.841±0.00 5.115±0.00 2.636±0.00 8.524±2.27 6.903±1.33 10.812±0.37 14.327±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076V CIL_00076V_0001 CGP 2:227362156-227561214

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005643 TAS nuclear pore
GO:0006406 TAS mRNA export from nucleus
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0030154 IEA cell differentiation
GO:0031410 IEA cytoplasmic vesicle
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000189220 Agfg1-001 protein_coding Mus_musculus 0 2531
ENSMUST00000186302 Agfg1-002 protein_coding Mus_musculus 0 2508
ENSMUST00000113444 Agfg1-004 protein_coding Mus_musculus 0 1960
ENSMUST00000063380 Agfg1-005 protein_coding Mus_musculus 0 1639
ENSMUST00000190046 Agfg1-007 protein_coding Mus_musculus 0 1229
ENSMUST00000187899 Agfg1-006 protein_coding Mus_musculus 0 1206
ENSMUST00000190052 Agfg1-003 protein_coding Mus_musculus 0 1096
ENSMUST00000186043 Agfg1-008 protein_coding Mus_musculus 0 977
ENSDART00000043960 agfg1a-001 protein_coding Danio_rerio 0 411
ENSDART00000144944 agfg1a-002 nonsense_mediated_decay Danio_rerio 0 363

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