C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ArfGAP with FG repeats 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310078 AGFG1-001 ENSG00000173744 9606 + 2:227472162-227561214 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310078
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310078 5.601±0.00 1.846±0.00 3.313±0.00 4.730±0.88 0.721±0.09 0.736±0.28 3.159±0.00 1.271±0.51 1.841±0.05 0.567±0.00 3.769±0.75 3.969±1.76 7.993±3.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076V CIL_00076V_0001 CGP 2:227362156-227561214

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005643 TAS nuclear pore
GO:0006406 TAS mRNA export from nucleus
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0030154 IEA cell differentiation
GO:0031410 IEA cytoplasmic vesicle
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000189220 Agfg1-001 protein_coding Mus_musculus 0 3903
ENSMUST00000186302 Agfg1-002 protein_coding Mus_musculus 0 3290
ENSMUST00000063380 Agfg1-005 protein_coding Mus_musculus 0 2152
ENSMUST00000113444 Agfg1-004 protein_coding Mus_musculus 0 1993
ENSMUST00000190052 Agfg1-003 protein_coding Mus_musculus 0 1808
ENSMUST00000187899 Agfg1-006 protein_coding Mus_musculus 0 1807
ENSMUST00000190046 Agfg1-007 protein_coding Mus_musculus 0 1229
ENSMUST00000186043 Agfg1-008 protein_coding Mus_musculus 0 977
ENSDART00000043960 agfg1a-001 protein_coding Danio_rerio 0 411
ENSDART00000144944 agfg1a-002 nonsense_mediated_decay Danio_rerio 0 363

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