C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polyhomeotic homolog 3 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000494943 PHC3-004 ENSG00000173889 9606 - 3:170095221-170181733 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaENST00000494943
Transcript ID Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta
ENST00000494943 3.512±0.00 3.607±0.00 5.690±0.00 5.547±0.00 2.466±0.00 1.753±0.00 7.715±0.00 0.967±0.00 3.754±0.00 0.317±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PJ CIL_0001PJ_0001 CGP 3:170037929-170181749
CIL_0002XN CIL_0002XN_0001 CGP 3:170086732-170305981

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0015629 IDA actin cytoskeleton
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168645 Phc3-001 protein_coding Mus_musculus 0 3989
ENSMUST00000129817 Phc3-202 protein_coding Mus_musculus 0 3699
ENSMUST00000108255 Phc3-002 protein_coding Mus_musculus 0 3123
ENSMUST00000177992 Phc3-203 protein_coding Mus_musculus 0 2909
ENSMUST00000046624 Phc3-004 nonsense_mediated_decay Mus_musculus 0 2244
ENSMUST00000064718 Phc3-201 protein_coding Mus_musculus 0 1903
ENSMUST00000099163 Phc3-003 protein_coding Mus_musculus 0 1844
ENSMUST00000152357 Phc3-005 nonsense_mediated_decay Mus_musculus 0 1585
ENSMUST00000150939 Phc3-007 retained_intron Mus_musculus 0 375

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