C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 53, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000174137 FAM53A 9606 - 4:1617915-1684302 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000308132 FAM53A-201 1639881-1684261 protein_coding
  ENST00000461064 FAM53A-002 1640495-1668905 protein_coding
  ENST00000463238 FAM53A-006 1655536-1684302 protein_coding
  ENST00000467215 FAM53A-005 1641562-1644953 retained_intron
  ENST00000472884 FAM53A-007 1640602-1683991 protein_coding
  ENST00000489029 FAM53A-004 1617915-1655408 protein_coding
  ENST00000489363 FAM53A-001 1640466-1684127 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308132ENST00000461064ENST00000463238ENST00000467215ENST00000472884ENST00000489029ENST00000489363
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308132 0.103±0.00 0.085±0.00 N/A N/A 0.027±0.00 N/A N/A 0.058±0.00 0.081±0.00 N/A N/A 0.107±0.00 N/A N/A
ENST00000461064 0.139±0.00 0.271±0.00 N/A 0.030±0.00 0.177±0.00 0.017±0.00 0.051±0.00 N/A 0.287±0.00 0.238±0.00 N/A 0.772±0.53 0.187±0.00 11.802±0.00
ENST00000463238 N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A 0.120±0.00 N/A 0.108±0.00 N/A
ENST00000467215 N/A N/A 0.126±0.00 0.100±0.00 0.212±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472884 0.212±0.00 N/A N/A 0.218±0.19 0.463±0.00 0.018±0.00 0.146±0.00 0.229±0.00 0.288±0.00 0.196±0.00 0.309±0.00 0.379±0.00 0.168±0.00 1.655±0.00
ENST00000489029 N/A 0.219±0.00 N/A N/A N/A 0.321±0.00 N/A N/A N/A 0.219±0.00 N/A 0.559±0.00 0.183±0.00 N/A
ENST00000489363 N/A N/A N/A 0.063±0.00 N/A 0.217±0.00 0.068±0.00 0.067±0.00 0.098±0.00 N/A N/A N/A N/A 2.997±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0001 VISTA 4:1311752-1912379
CIL_0006LY CIL_0006LY_0001 CGP 4:1402932-1684302
CIL_0006LX CIL_0006LX_0001 CGP 4:1617915-1712555

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000037339 Fam53a family with sequence similarity 53, member A protein_coding Mus_musculus

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