C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006LX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000174137-ENSG00000163950 CGP 9606 4:1617915-1712555
GeneTranscriptPositionBiotype
ENSG00000163950 (SLBP)
stem-loop binding protein 		ENST00000318386 (SLBP-004) 1692858-1712250 protein_coding
ENST00000429429 (SLBP-002) 1692800-1712318 protein_coding
ENST00000480936 (SLBP-006) 1696295-1712344 protein_coding
ENST00000483348 (SLBP-007) 1693244-1712018 protein_coding
ENST00000488267 (SLBP-003) 1693447-1712317 protein_coding
ENST00000489418 (SLBP-001) 1692800-1712555 protein_coding
ENSG00000174137 (FAM53A)
family with sequence similarity 53, member A 		ENST00000308132 (FAM53A-201) 1639881-1684261 protein_coding
ENST00000461064 (FAM53A-002) 1640495-1668905 protein_coding
ENST00000463238 (FAM53A-006) 1655536-1684302 protein_coding
ENST00000467215 (FAM53A-005) 1641562-1644953 retained_intron
ENST00000472884 (FAM53A-007) 1640602-1683991 protein_coding
ENST00000489029 (FAM53A-004) 1617915-1655408 protein_coding
ENST00000489363 (FAM53A-001) 1640466-1684127 protein_coding
ENSG00000207009 (Y_RNA)
Y RNA 		ENST00000384282 (Y_RNA.1-666) 1683420-1683529 misc_RNA
CIL_0006LX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037339-ENSMUSG00000004642 CGP 10090 5:33600351-33652574
GeneTranscriptPositionBiotype
ENSMUSG00000004642 (Slbp)
stem-loop binding protein 		ENSMUST00000057551 (Slbp-001) 33640055-33652574 protein_coding
ENSMUST00000075670 (Slbp-003) 33634952-33652345 protein_coding
ENSMUST00000101354 (Slbp-002) 33640055-33652306 protein_coding
ENSMUST00000126581 (Slbp-005) 33651625-33652301 retained_intron
ENSMUST00000139518 (Slbp-009) 33643481-33652300 retained_intron
ENSMUST00000143003 (Slbp-008) 33641941-33645801 retained_intron
ENSMUST00000143029 (Slbp-004) 33648662-33652353 retained_intron
ENSMUST00000146889 (Slbp-010) 33640386-33642162 retained_intron
ENSMUST00000148153 (Slbp-007) 33645628-33652338 retained_intron
ENSMUST00000151081 (Slbp-006) 33645629-33652296 protein_coding
ENSMUSG00000037339 (Fam53a)
family with sequence similarity 53, member A 		ENSMUST00000045329 (Fam53a-002) 33600356-33629622 protein_coding
ENSMUST00000065119 (Fam53a-001) 33600351-33629635 protein_coding
ENSMUST00000065162 (Fam53a-006) 33600356-33628912 protein_coding
ENSMUST00000137705 (Fam53a-005) 33608215-33629583 nonsense_mediated_decay
ENSMUST00000140043 (Fam53a-008) 33614815-33629605 processed_transcript
ENSMUST00000150033 (Fam53a-003) 33600356-33629588 nonsense_mediated_decay
ENSMUST00000153696 (Fam53a-004) 33608388-33629599 protein_coding
ENSMUST00000155980 (Fam53a-007) 33610460-33629062 protein_coding
ENSMUSG00000097271 (Gm9903)
predicted gene 9903 		ENSMUST00000181102 (Gm9903-201) 33629925-33632092 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006LX_0001ENSG00000163950ENST00000318386ENST00000429429ENST00000480936ENST00000483348ENST00000488267ENST00000489418ENSG00000174137ENST00000308132ENST00000461064ENST00000463238ENST00000467215ENST00000472884ENST00000489029ENST00000489363ENSG00000207009ENST00000384282CIL_0006LX_0002ENSMUSG00000004642ENSMUST00000057551ENSMUST00000075670ENSMUST00000101354ENSMUST00000126581ENSMUST00000139518ENSMUST00000143003ENSMUST00000143029ENSMUST00000146889ENSMUST00000148153ENSMUST00000151081ENSMUSG00000037339ENSMUST00000045329ENSMUST00000065119ENSMUST00000065162ENSMUST00000137705ENSMUST00000140043ENSMUST00000150033ENSMUST00000153696ENSMUST00000155980ENSMUSG00000097271ENSMUST00000181102
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006LX_0001ENSG00000163950ENST00000318386ENST00000429429ENST00000480936ENST00000483348ENST00000488267ENST00000489418ENSG00000174137ENST00000308132ENST00000461064ENST00000463238ENST00000467215ENST00000472884ENST00000489029ENST00000489363ENSG00000207009ENST00000384282CIL_0006LX_0002ENSMUSG00000004642ENSMUST00000057551ENSMUST00000075670ENSMUST00000101354ENSMUST00000126581ENSMUST00000139518ENSMUST00000146889ENSMUST00000148153ENSMUSG00000037339ENSMUST00000045329ENSMUST00000065119ENSMUST00000065162ENSMUST00000140043ENSMUST00000150033ENSMUSG00000097271ENSMUST00000181102
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163950 ENST00000318386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.694±0.00 N/A N/A
ENST00000429429 4.333±0.00 3.856±0.00 0.478±0.00 6.431±0.00 3.098±0.00 3.946±2.32 N/A 0.784±0.00 N/A 0.672±0.00 N/A 4.113±3.25 4.980±1.35 N/A
ENST00000480936 N/A N/A 1.268±0.00 N/A 3.460±0.00 N/A N/A N/A 2.202±0.00 N/A 1.118±0.00 5.809±0.00 N/A N/A
ENST00000483348 N/A N/A N/A N/A N/A N/A 1.663±0.00 N/A 2.175±0.00 4.161±0.00 3.296±0.00 N/A N/A N/A
ENST00000488267 4.395±0.00 N/A N/A 11.682±0.00 5.507±0.00 3.104±2.05 1.357±0.00 8.169±0.00 1.146±0.00 7.034±0.00 N/A 19.178±0.00 31.103±0.00 45.724±0.00
ENST00000489418 4.685±0.00 9.370±0.00 1.067±0.00 2.313±0.00 5.061±3.43 2.820±1.68 1.679±1.55 8.914±6.53 6.403±0.00 4.734±3.11 2.703±1.10 9.701±5.28 17.073±2.88 30.494±0.00
ENSG00000174137 ENST00000308132 0.103±0.00 0.085±0.00 N/A N/A 0.027±0.00 N/A N/A 0.058±0.00 0.081±0.00 N/A N/A 0.107±0.00 N/A N/A
ENST00000461064 0.139±0.00 0.271±0.00 N/A 0.030±0.00 0.177±0.00 0.017±0.00 0.051±0.00 N/A 0.287±0.00 0.238±0.00 N/A 0.772±0.53 0.187±0.00 11.802±0.00
ENST00000463238 N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A 0.120±0.00 N/A 0.108±0.00 N/A
ENST00000467215 N/A N/A 0.126±0.00 0.100±0.00 0.212±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472884 0.212±0.00 N/A N/A 0.218±0.19 0.463±0.00 0.018±0.00 0.146±0.00 0.229±0.00 0.288±0.00 0.196±0.00 0.309±0.00 0.379±0.00 0.168±0.00 1.655±0.00
ENST00000489029 N/A 0.219±0.00 N/A N/A N/A 0.321±0.00 N/A N/A N/A 0.219±0.00 N/A 0.559±0.00 0.183±0.00 N/A
ENST00000489363 N/A N/A N/A 0.063±0.00 N/A 0.217±0.00 0.068±0.00 0.067±0.00 0.098±0.00 N/A N/A N/A N/A 2.997±0.32
ENSG00000207009 ENST00000384282 0.565±0.00 N/A N/A N/A 0.567±0.00 N/A N/A N/A N/A N/A 1.302±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004642 ENSMUST00000057551 2.132±0.85 1.972±0.78 11.232±1.62 16.101±8.85 3.645±0.65 2.210±0.00 2.301±0.70 2.872±1.23 59.298±50.51 2.778±0.54 2.456±0.33 8.440±7.28 26.419±10.76 16.078±0.75
ENSMUST00000075670 1.769±0.00 2.993±0.74 N/A N/A 2.362±0.14 4.440±1.00 N/A 2.000±0.63 2.447±0.36 N/A N/A 5.579±0.09 N/A 30.701±7.86
ENSMUST00000101354 2.896±1.08 N/A N/A 4.185±0.97 0.827±0.00 4.767±1.22 1.745±0.74 2.665±1.42 1.734±0.51 4.030±1.24 0.387±0.00 7.505±3.52 20.576±7.84 N/A
ENSMUST00000126581 N/A N/A N/A N/A N/A 3.936±0.00 N/A N/A N/A N/A N/A 12.102±0.00 N/A N/A
ENSMUST00000139518 2.674±0.00 N/A N/A N/A N/A N/A 1.430±0.00 1.717±0.00 0.803±0.00 N/A N/A N/A N/A N/A
ENSMUST00000143003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146889 N/A N/A N/A N/A 3.030±1.03 N/A 1.091±0.00 N/A 1.719±0.00 N/A N/A N/A N/A N/A
ENSMUST00000148153 6.467±2.35 20.482±5.56 N/A N/A 24.863±11.89 23.082±8.09 2.237±0.00 6.718±4.87 2.074±0.45 12.647±4.47 N/A 49.999±13.64 N/A N/A
ENSMUST00000151081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037339 ENSMUST00000045329 3.501±0.04 4.028±0.37 2.018±0.14 2.940±1.57 4.506±1.62 2.885±0.54 1.400±0.05 1.379±0.13 2.162±0.96 3.135±0.41 N/A 9.906±2.67 3.352±2.01 2.328±1.08
ENSMUST00000065119 6.612±1.49 13.922±5.80 5.134±0.23 3.909±2.59 10.823±1.65 11.204±4.33 5.075±1.73 6.832±0.69 4.704±1.85 7.943±0.80 25.303±1.72 21.093±7.27 7.472±4.02 5.228±0.85
ENSMUST00000065162 1.837±0.71 2.134±0.21 1.814±0.11 0.817±0.21 2.760±0.25 1.838±0.20 1.127±0.12 0.862±0.15 0.843±0.36 2.541±0.11 1.276±0.14 5.240±1.27 0.497±0.16 0.738±0.34
ENSMUST00000137705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140043 N/A 21.068±3.27 N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.276±0.00 N/A N/A
ENSMUST00000150033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.025±0.00
ENSMUST00000153696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000097271 ENSMUST00000181102 0.460±0.18 0.101±0.05 0.301±0.02 0.130±0.06 0.382±0.09 0.383±0.07 0.876±0.24 0.263±0.09 0.069±0.04 0.356±0.09 0.178±0.06 0.381±0.20 0.136±0.04 7.643±2.70

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