C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 53, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037339 Fam53a 10090 - 5:33600351-33629635 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045329 Fam53a-002 33600356-33629622 protein_coding
  ENSMUST00000065119 Fam53a-001 33600351-33629635 protein_coding
  ENSMUST00000065162 Fam53a-006 33600356-33628912 protein_coding
  ENSMUST00000137705 Fam53a-005 33608215-33629583 nonsense_mediated_decay
  ENSMUST00000140043 Fam53a-008 33614815-33629605 processed_transcript
  ENSMUST00000150033 Fam53a-003 33600356-33629588 nonsense_mediated_decay
  ENSMUST00000153696 Fam53a-004 33608388-33629599 protein_coding
  ENSMUST00000155980 Fam53a-007 33610460-33629062 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045329ENSMUST00000065119ENSMUST00000065162ENSMUST00000140043ENSMUST00000150033
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045329 3.501±0.04 4.028±0.37 2.018±0.14 2.940±1.57 4.506±1.62 2.885±0.54 1.400±0.05 1.379±0.13 2.162±0.96 3.135±0.41 N/A 9.906±2.67 3.352±2.01 2.328±1.08
ENSMUST00000065119 6.612±1.49 13.922±5.80 5.134±0.23 3.909±2.59 10.823±1.65 11.204±4.33 5.075±1.73 6.832±0.69 4.704±1.85 7.943±0.80 25.303±1.72 21.093±7.27 7.472±4.02 5.228±0.85
ENSMUST00000065162 1.837±0.71 2.134±0.21 1.814±0.11 0.817±0.21 2.760±0.25 1.838±0.20 1.127±0.12 0.862±0.15 0.843±0.36 2.541±0.11 1.276±0.14 5.240±1.27 0.497±0.16 0.738±0.34
ENSMUST00000140043 N/A 21.068±3.27 N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.276±0.00 N/A N/A
ENSMUST00000150033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.025±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006LY CIL_0006LY_0002 CGP 5:33430734-33629635
CIL_0006LX CIL_0006LX_0002 CGP 5:33600351-33652574

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 ISO nucleus
GO:0006606 ISO protein import into nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000174137 FAM53A family with sequence similarity 53, member A protein_coding Homo_sapiens

Loading