C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytosolic thiouridylase subunit 2 homolog (S. pombe)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000174177 CTU2 9606 + 16:88706463-88715386 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000312060 CTU2-002 88706483-88715386 protein_coding
  ENST00000453996 CTU2-001 88706463-88715386 protein_coding
  ENST00000562011 CTU2-007 88714985-88715383 retained_intron
  ENST00000564105 CTU2-003 88706483-88715320 nonsense_mediated_decay
  ENST00000564584 CTU2-008 88713480-88715364 retained_intron
  ENST00000564921 CTU2-009 88706589-88712382 protein_coding
  ENST00000565071 CTU2-010 88706545-88710908 retained_intron
  ENST00000566637 CTU2-005 88709959-88715386 retained_intron
  ENST00000567316 CTU2-006 88714682-88715376 protein_coding
  ENST00000567949 CTU2-004 88706522-88715386 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleTestisENST00000453996ENST00000564105ENST00000564921
Transcript ID Brain Liver Muscle Testis
ENST00000453996 3.358±1.80 4.465±0.00 5.200±0.00 5.006±0.00
ENST00000564105 1.473±0.00 N/A 4.980±0.00 8.203±0.00
ENST00000564921 N/A N/A 2.055±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091T CIL_00091T_0001 VISTA 16:88690989-89294615
CIL_0000Y8 CIL_0000Y8_0002 CGP 16:88696495-88715386
CIL_0000Y5 CIL_0000Y5_0002 CGP 16:88706463-88785211

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0002098 NAS:IEA tRNA wobble uridine modification
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0016779 IEA nucleotidyltransferase activity
GO:0032447 IEA protein urmylation
GO:0034227 NAS:IEA tRNA thio-modification
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051851 ctu2 cytosolic thiouridylase subunit 2 homolog (S. pombe) protein_coding Danio_rerio
ENSMUSG00000049482 Ctu2 cytosolic thiouridylase subunit 2 homolog (S. pombe) protein_coding Mus_musculus

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