Institute of Cardiovascular Regeneration Webtool Repository

Source ID	Type	Tax ID	Position
ENSDARG00000051851-ENSDARG00000076870	CGP	7955	7:56556222-56778717
Gene	Transcript	Position	Biotype
ENSDARG00000051851 (ctu2) cytosolic thiouridylase subunit 2 homolog (S. pombe)	ENSDART00000073555 (ctu2-001)	56556241-56588975	protein_coding
ENSDART00000132852 (ctu2-003)	56577469-56588958	protein_coding
ENSDART00000147539 (ctu2-002)	56556222-56563742	protein_coding
ENSDARG00000076870 (piezo1) piezo-type mechanosensitive ion channel component 1	ENSDART00000108646 (piezo1-201)	56589025-56778717	protein_coding

Source ID	Type	Tax ID	Position
ENSG00000174177-ENSG00000103335	CGP	9606	16:88706463-88785211
Gene	Transcript	Position	Biotype
ENSG00000103335 (PIEZO1) piezo-type mechanosensitive ion channel component 1	ENST00000301015 (PIEZO1-001)	88715346-88785211	protein_coding
ENST00000327397 (PIEZO1-201)	88715491-88717611	protein_coding
ENST00000419505 (PIEZO1-003)	88715343-88719890	nonsense_mediated_decay
ENST00000466823 (PIEZO1-017)	88717722-88720258	protein_coding
ENST00000472168 (PIEZO1-013)	88715816-88716792	retained_intron
ENST00000474606 (PIEZO1-009)	88722982-88726344	protein_coding
ENST00000475586 (PIEZO1-008)	88723947-88726025	retained_intron
ENST00000484567 (PIEZO1-004)	88715343-88718318	retained_intron
ENST00000490756 (PIEZO1-006)	88732464-88732980	retained_intron
ENST00000491917 (PIEZO1-007)	88727074-88727843	retained_intron
ENST00000495568 (PIEZO1-010)	88717023-88720473	retained_intron
ENST00000497793 (PIEZO1-011)	88718972-88720387	retained_intron
ENST00000518793 (PIEZO1-015)	88715343-88716277	protein_coding
ENST00000521877 (PIEZO1-014)	88715449-88716212	retained_intron
ENST00000566414 (PIEZO1-016)	88722523-88723934	retained_intron
ENSG00000182376 (RP5-1142A6.8)	ENST00000333666 (RP5-1142A6.8-002)	88742767-88745748	antisense
ENST00000567588 (RP5-1142A6.8-001)	88742821-88745464	antisense
ENSG00000260121 (RP5-1142A6.9)	ENST00000564984 (RP5-1142A6.9-001)	88718615-88720459	antisense
ENSG00000265672 (MIR4722) microRNA 4722	ENST00000578292 (MIR4722-201)	88716278-88716337	miRNA

Notice (8): Undefined index: CIL_0000Y5_0003 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0000Y5_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0000Y5_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000051851' => 'cytosolic thiouridylase subunit 2 homolog (S. pombe)',
		'ENSDARG00000076870' => 'piezo-type mechanosensitive ion channel component 1',
		'ENSG00000103335' => 'piezo-type mechanosensitive ion channel component 1',
		'ENSG00000174177' => 'cytosolic thiouridylase subunit 2 homolog (S. pombe)',
		'ENSG00000182376' => null,
		'ENSG00000224888' => null,
		'ENSG00000260121' => null,
		'ENSG00000260617' => null,
		'ENSG00000265672' => 'microRNA 4722',
		'ENSG00000278341' => null,
		'ENSMUSG00000014444' => 'piezo-type mechanosensitive ion channel component 1',
		'ENSMUSG00000049482' => 'cytosolic thiouridylase subunit 2 homolog (S. pombe)',
		'ENSMUSG00000065080' => 'predicted gene, 26497'
	),
	'gene_name_arr' => array(
		'ENSDARG00000051851' => 'ctu2',
		'ENSDARG00000076870' => 'piezo1',
		'ENSG00000103335' => 'PIEZO1',
		'ENSG00000174177' => 'CTU2',
		'ENSG00000182376' => 'RP5-1142A6.8',
		'ENSG00000224888' => 'RP5-1142A6.2',
		'ENSG00000260121' => 'RP5-1142A6.9',
		'ENSG00000260617' => 'RP5-1142A6.7',
		'ENSG00000265672' => 'MIR4722',
		'ENSG00000278341' => 'RP5-1142A6.10',
		'ENSMUSG00000014444' => 'Piezo1',
		'ENSMUSG00000049482' => 'Ctu2',
		'ENSMUSG00000065080' => 'Gm26497'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 3 => 'Adrenal',
		(int) 7 => 'Bladder',
		(int) 8 => 'Brain',
		(int) 15 => 'Breast',
		(int) 21 => 'Colon',
		(int) 26 => 'Heart',
		(int) 31 => 'Kidney',
		(int) 39 => 'Liver',
		(int) 48 => 'Lung',
		(int) 54 => 'Muscle',
		(int) 62 => 'Ovary',
		(int) 67 => 'Placenta',
		(int) 70 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 56,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENSDART00000073555' => array(
			'start' => '56556241',
			'end' => '56588975',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'ctu2-001'
		),
		'ENSDART00000132852' => array(
			'start' => '56577469',
			'end' => '56588958',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'ctu2-003'
		),
		'ENSDART00000147539' => array(
			'start' => '56556222',
			'end' => '56563742',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'ctu2-002'
		),
		'ENSDART00000108646' => array(
			'start' => '56589025',
			'end' => '56778717',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'piezo1-201'
		),
		'ENST00000301015' => array(
			'start' => '88715346',
			'end' => '88785211',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PIEZO1-001'
		),
		'ENST00000327397' => array(
			'start' => '88715491',
			'end' => '88717611',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PIEZO1-201'
		),
		'ENST00000419505' => array(
			'start' => '88715343',
			'end' => '88719890',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'PIEZO1-003'
		),
		'ENST00000466823' => array(
			'start' => '88717722',
			'end' => '88720258',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PIEZO1-017'
		),
		'ENST00000472168' => array(
			'start' => '88715816',
			'end' => '88716792',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-013'
		),
		'ENST00000474606' => array(
			'start' => '88722982',
			'end' => '88726344',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PIEZO1-009'
		),
		'ENST00000475586' => array(
			'start' => '88723947',
			'end' => '88726025',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-008'
		),
		'ENST00000484567' => array(
			'start' => '88715343',
			'end' => '88718318',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-004'
		),
		'ENST00000490756' => array(
			'start' => '88732464',
			'end' => '88732980',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-006'
		),
		'ENST00000491917' => array(
			'start' => '88727074',
			'end' => '88727843',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-007'
		),
		'ENST00000495568' => array(
			'start' => '88717023',
			'end' => '88720473',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-010'
		),
		'ENST00000497793' => array(
			'start' => '88718972',
			'end' => '88720387',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-011'
		),
		'ENST00000518793' => array(
			'start' => '88715343',
			'end' => '88716277',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PIEZO1-015'
		),
		'ENST00000521877' => array(
			'start' => '88715449',
			'end' => '88716212',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-014'
		),
		'ENST00000566414' => array(
			'start' => '88722523',
			'end' => '88723934',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-016'
		),
		'ENST00000312060' => array(
			'start' => '88706483',
			'end' => '88715386',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CTU2-002'
		),
		'ENST00000453996' => array(
			'start' => '88706463',
			'end' => '88715386',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CTU2-001'
		),
		'ENST00000562011' => array(
			'start' => '88714985',
			'end' => '88715383',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CTU2-007'
		),
		'ENST00000564105' => array(
			'start' => '88706483',
			'end' => '88715320',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CTU2-003'
		),
		'ENST00000564584' => array(
			'start' => '88713480',
			'end' => '88715364',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CTU2-008'
		),
		'ENST00000564921' => array(
			'start' => '88706589',
			'end' => '88712382',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CTU2-009'
		),
		'ENST00000565071' => array(
			'start' => '88706545',
			'end' => '88710908',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CTU2-010'
		),
		'ENST00000566637' => array(
			'start' => '88709959',
			'end' => '88715386',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CTU2-005'
		),
		'ENST00000567316' => array(
			'start' => '88714682',
			'end' => '88715376',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CTU2-006'
		),
		'ENST00000567949' => array(
			'start' => '88706522',
			'end' => '88715386',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CTU2-004'
		),
		'ENST00000333666' => array(
			'start' => '88742767',
			'end' => '88745748',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.8-002'
		),
		'ENST00000567588' => array(
			'start' => '88742821',
			'end' => '88745464',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.8-001'
		),
		'ENST00000440406' => array(
			'start' => '88731180',
			'end' => '88739188',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.2-001'
		),
		'ENST00000567968' => array(
			'start' => '88736800',
			'end' => '88741425',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.2-003'
		),
		'ENST00000564984' => array(
			'start' => '88718615',
			'end' => '88720459',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.9-001'
		),
		'ENST00000566114' => array(
			'start' => '88741631',
			'end' => '88742367',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.7-001'
		),
		'ENST00000578292' => array(
			'start' => '88716278',
			'end' => '88716337',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR4722-201'
		),
		'ENST00000616106' => array(
			'start' => '88708956',
			'end' => '88710437',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.10-001'
		),
		'ENSMUST00000067252' => array(
			'start' => '122481698',
			'end' => '122551329',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Piezo1-201'
		),
		'ENSMUST00000123671' => array(
			'start' => '122481721',
			'end' => '122484780',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Piezo1-008'
		),
		'ENSMUST00000126553' => array(
			'start' => '122483367',
			'end' => '122483869',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Piezo1-007'
		),
		'ENSMUST00000128383' => array(
			'start' => '122481982',
			'end' => '122499885',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'Piezo1-001'
		),
		'ENSMUST00000134304' => array(
			'start' => '122482041',
			'end' => '122483000',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Piezo1-006'
		),
		'ENSMUST00000148497' => array(
			'start' => '122485924',
			'end' => '122498204',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'Piezo1-002'
		),
		'ENSMUST00000152596' => array(
			'start' => '122484865',
			'end' => '122485624',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Piezo1-004'
		),
		'ENSMUST00000155803' => array(
			'start' => '122482080',
			'end' => '122482676',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Piezo1-005'
		),
		'ENSMUST00000156333' => array(
			'start' => '122481712',
			'end' => '122499886',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Piezo1-003'
		),
		'ENSMUST00000116412' => array(
			'start' => '122476143',
			'end' => '122483092',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ctu2-001'
		),
		'ENSMUST00000128472' => array(
			'start' => '122476693',
			'end' => '122478245',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ctu2-005'
		),
		'ENSMUST00000131934' => array(
			'start' => '122480922',
			'end' => '122481740',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ctu2-009'
		),
		'ENSMUST00000134127' => array(
			'start' => '122476220',
			'end' => '122479343',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ctu2-007'
		),
		'ENSMUST00000136253' => array(
			'start' => '122480957',
			'end' => '122481744',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ctu2-008'
		),
		'ENSMUST00000146634' => array(
			'start' => '122476213',
			'end' => '122478213',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ctu2-006'
		),
		'ENSMUST00000149925' => array(
			'start' => '122476243',
			'end' => '122478948',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ctu2-004'
		),
		'ENSMUST00000151855' => array(
			'start' => '122476209',
			'end' => '122484138',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'Ctu2-002'
		),
		'ENSMUST00000154099' => array(
			'start' => '122476213',
			'end' => '122481741',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ctu2-003'
		),
		'ENSMUST00000083146' => array(
			'start' => '122520568',
			'end' => '122520674',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'Gm26497-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0000Y5_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0000Y5_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0000Y5_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000051851' => array(
				[maximum depth reached]
			),
			'ENSDARG00000076870' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Brain',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Muscle'
		)
	),
	'CIL_0000Y5_0002' => array(
		'genes_in_region' => array(
			'ENSG00000103335' => array(
				[maximum depth reached]
			),
			'ENSG00000182376' => array(
				[maximum depth reached]
			),
			'ENSG00000260121' => array(
				[maximum depth reached]
			),
			'ENSG00000265672' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Breast',
			(int) 4 => 'Colon',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Lung',
			(int) 9 => 'Muscle',
			(int) 10 => 'Ovary',
			(int) 11 => 'Placenta',
			(int) 12 => 'Testis',
			(int) 13 => 'Colon',
			(int) 14 => 'Kidney',
			(int) 15 => 'Liver',
			(int) 16 => 'Brain',
			(int) 17 => 'Breast',
			(int) 18 => 'Kidney',
			(int) 19 => 'Liver',
			(int) 20 => 'Lung',
			(int) 21 => 'Breast',
			(int) 22 => 'Lung',
			(int) 23 => 'Muscle',
			(int) 24 => 'Ovary',
			(int) 25 => 'Testis',
			(int) 26 => 'Muscle',
			(int) 27 => 'Brain',
			(int) 28 => 'Liver',
			(int) 29 => 'Muscle',
			(int) 30 => 'Testis',
			(int) 31 => 'Brain',
			(int) 32 => 'Muscle',
			(int) 33 => 'Testis',
			(int) 34 => 'Muscle',
			(int) 35 => 'Adipose',
			(int) 36 => 'Adrenal',
			(int) 37 => 'Brain',
			(int) 38 => 'Breast',
			(int) 39 => 'Colon',
			(int) 40 => 'Heart',
			(int) 41 => 'Kidney',
			(int) 42 => 'Liver',
			(int) 43 => 'Lung',
			(int) 44 => 'Muscle',
			(int) 45 => 'Ovary',
			(int) 46 => 'Placenta',
			(int) 47 => 'Testis',
			(int) 48 => 'Adrenal',
			(int) 49 => 'Bladder',
			(int) 50 => 'Breast',
			(int) 51 => 'Colon',
			(int) 52 => 'Kidney',
			(int) 53 => 'Liver',
			(int) 54 => 'Ovary',
			(int) 55 => 'Placenta',
			(int) 56 => 'Testis',
			(int) 57 => 'Adipose',
			(int) 58 => 'Adrenal',
			(int) 59 => 'Breast',
			(int) 60 => 'Colon',
			(int) 61 => 'Heart',
			(int) 62 => 'Kidney',
			(int) 63 => 'Liver',
			(int) 64 => 'Lung',
			(int) 65 => 'Ovary',
			(int) 66 => 'Lung'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000051851' => 'cytosolic thiouridylase subunit 2 homolog (S. pombe)',
	'ENSDARG00000076870' => 'piezo-type mechanosensitive ion channel component 1',
	'ENSG00000103335' => 'piezo-type mechanosensitive ion channel component 1',
	'ENSG00000174177' => 'cytosolic thiouridylase subunit 2 homolog (S. pombe)',
	'ENSG00000182376' => null,
	'ENSG00000224888' => null,
	'ENSG00000260121' => null,
	'ENSG00000260617' => null,
	'ENSG00000265672' => 'microRNA 4722',
	'ENSG00000278341' => null,
	'ENSMUSG00000014444' => 'piezo-type mechanosensitive ion channel component 1',
	'ENSMUSG00000049482' => 'cytosolic thiouridylase subunit 2 homolog (S. pombe)',
	'ENSMUSG00000065080' => 'predicted gene, 26497'
)
$gene_name_arr = array(
	'ENSDARG00000051851' => 'ctu2',
	'ENSDARG00000076870' => 'piezo1',
	'ENSG00000103335' => 'PIEZO1',
	'ENSG00000174177' => 'CTU2',
	'ENSG00000182376' => 'RP5-1142A6.8',
	'ENSG00000224888' => 'RP5-1142A6.2',
	'ENSG00000260121' => 'RP5-1142A6.9',
	'ENSG00000260617' => 'RP5-1142A6.7',
	'ENSG00000265672' => 'MIR4722',
	'ENSG00000278341' => 'RP5-1142A6.10',
	'ENSMUSG00000014444' => 'Piezo1',
	'ENSMUSG00000049482' => 'Ctu2',
	'ENSMUSG00000065080' => 'Gm26497'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0000Y5_0001',
			'tax_id' => '7955',
			'chromosome' => '7',
			'seq_start' => '56556222',
			'seq_end' => '56778717',
			'region_length' => '222495',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000051851-ENSDARG00000076870'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0000Y5_0002',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '88706463',
			'seq_end' => '88785211',
			'region_length' => '78748',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000174177-ENSG00000103335'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0000Y5_0003',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '122476143',
			'seq_end' => '122551329',
			'region_length' => '75186',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000049482-ENSMUSG00000014444'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 3 => 'Adrenal',
	(int) 7 => 'Bladder',
	(int) 8 => 'Brain',
	(int) 15 => 'Breast',
	(int) 21 => 'Colon',
	(int) 26 => 'Heart',
	(int) 31 => 'Kidney',
	(int) 39 => 'Liver',
	(int) 48 => 'Lung',
	(int) 54 => 'Muscle',
	(int) 62 => 'Ovary',
	(int) 67 => 'Placenta',
	(int) 70 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 56
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENSDART00000073555' => array(
		'start' => '56556241',
		'end' => '56588975',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'ctu2-001'
	),
	'ENSDART00000132852' => array(
		'start' => '56577469',
		'end' => '56588958',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'ctu2-003'
	),
	'ENSDART00000147539' => array(
		'start' => '56556222',
		'end' => '56563742',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'ctu2-002'
	),
	'ENSDART00000108646' => array(
		'start' => '56589025',
		'end' => '56778717',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'piezo1-201'
	),
	'ENST00000301015' => array(
		'start' => '88715346',
		'end' => '88785211',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PIEZO1-001'
	),
	'ENST00000327397' => array(
		'start' => '88715491',
		'end' => '88717611',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PIEZO1-201'
	),
	'ENST00000419505' => array(
		'start' => '88715343',
		'end' => '88719890',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'PIEZO1-003'
	),
	'ENST00000466823' => array(
		'start' => '88717722',
		'end' => '88720258',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PIEZO1-017'
	),
	'ENST00000472168' => array(
		'start' => '88715816',
		'end' => '88716792',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-013'
	),
	'ENST00000474606' => array(
		'start' => '88722982',
		'end' => '88726344',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PIEZO1-009'
	),
	'ENST00000475586' => array(
		'start' => '88723947',
		'end' => '88726025',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-008'
	),
	'ENST00000484567' => array(
		'start' => '88715343',
		'end' => '88718318',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-004'
	),
	'ENST00000490756' => array(
		'start' => '88732464',
		'end' => '88732980',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-006'
	),
	'ENST00000491917' => array(
		'start' => '88727074',
		'end' => '88727843',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-007'
	),
	'ENST00000495568' => array(
		'start' => '88717023',
		'end' => '88720473',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-010'
	),
	'ENST00000497793' => array(
		'start' => '88718972',
		'end' => '88720387',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-011'
	),
	'ENST00000518793' => array(
		'start' => '88715343',
		'end' => '88716277',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PIEZO1-015'
	),
	'ENST00000521877' => array(
		'start' => '88715449',
		'end' => '88716212',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-014'
	),
	'ENST00000566414' => array(
		'start' => '88722523',
		'end' => '88723934',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-016'
	),
	'ENST00000312060' => array(
		'start' => '88706483',
		'end' => '88715386',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CTU2-002'
	),
	'ENST00000453996' => array(
		'start' => '88706463',
		'end' => '88715386',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CTU2-001'
	),
	'ENST00000562011' => array(
		'start' => '88714985',
		'end' => '88715383',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CTU2-007'
	),
	'ENST00000564105' => array(
		'start' => '88706483',
		'end' => '88715320',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CTU2-003'
	),
	'ENST00000564584' => array(
		'start' => '88713480',
		'end' => '88715364',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CTU2-008'
	),
	'ENST00000564921' => array(
		'start' => '88706589',
		'end' => '88712382',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CTU2-009'
	),
	'ENST00000565071' => array(
		'start' => '88706545',
		'end' => '88710908',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CTU2-010'
	),
	'ENST00000566637' => array(
		'start' => '88709959',
		'end' => '88715386',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CTU2-005'
	),
	'ENST00000567316' => array(
		'start' => '88714682',
		'end' => '88715376',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CTU2-006'
	),
	'ENST00000567949' => array(
		'start' => '88706522',
		'end' => '88715386',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CTU2-004'
	),
	'ENST00000333666' => array(
		'start' => '88742767',
		'end' => '88745748',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.8-002'
	),
	'ENST00000567588' => array(
		'start' => '88742821',
		'end' => '88745464',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.8-001'
	),
	'ENST00000440406' => array(
		'start' => '88731180',
		'end' => '88739188',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.2-001'
	),
	'ENST00000567968' => array(
		'start' => '88736800',
		'end' => '88741425',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.2-003'
	),
	'ENST00000564984' => array(
		'start' => '88718615',
		'end' => '88720459',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.9-001'
	),
	'ENST00000566114' => array(
		'start' => '88741631',
		'end' => '88742367',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.7-001'
	),
	'ENST00000578292' => array(
		'start' => '88716278',
		'end' => '88716337',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR4722-201'
	),
	'ENST00000616106' => array(
		'start' => '88708956',
		'end' => '88710437',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.10-001'
	),
	'ENSMUST00000067252' => array(
		'start' => '122481698',
		'end' => '122551329',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Piezo1-201'
	),
	'ENSMUST00000123671' => array(
		'start' => '122481721',
		'end' => '122484780',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Piezo1-008'
	),
	'ENSMUST00000126553' => array(
		'start' => '122483367',
		'end' => '122483869',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Piezo1-007'
	),
	'ENSMUST00000128383' => array(
		'start' => '122481982',
		'end' => '122499885',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'Piezo1-001'
	),
	'ENSMUST00000134304' => array(
		'start' => '122482041',
		'end' => '122483000',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Piezo1-006'
	),
	'ENSMUST00000148497' => array(
		'start' => '122485924',
		'end' => '122498204',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'Piezo1-002'
	),
	'ENSMUST00000152596' => array(
		'start' => '122484865',
		'end' => '122485624',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Piezo1-004'
	),
	'ENSMUST00000155803' => array(
		'start' => '122482080',
		'end' => '122482676',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Piezo1-005'
	),
	'ENSMUST00000156333' => array(
		'start' => '122481712',
		'end' => '122499886',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Piezo1-003'
	),
	'ENSMUST00000116412' => array(
		'start' => '122476143',
		'end' => '122483092',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ctu2-001'
	),
	'ENSMUST00000128472' => array(
		'start' => '122476693',
		'end' => '122478245',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ctu2-005'
	),
	'ENSMUST00000131934' => array(
		'start' => '122480922',
		'end' => '122481740',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ctu2-009'
	),
	'ENSMUST00000134127' => array(
		'start' => '122476220',
		'end' => '122479343',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ctu2-007'
	),
	'ENSMUST00000136253' => array(
		'start' => '122480957',
		'end' => '122481744',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ctu2-008'
	),
	'ENSMUST00000146634' => array(
		'start' => '122476213',
		'end' => '122478213',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ctu2-006'
	),
	'ENSMUST00000149925' => array(
		'start' => '122476243',
		'end' => '122478948',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ctu2-004'
	),
	'ENSMUST00000151855' => array(
		'start' => '122476209',
		'end' => '122484138',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'Ctu2-002'
	),
	'ENSMUST00000154099' => array(
		'start' => '122476213',
		'end' => '122481741',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ctu2-003'
	),
	'ENSMUST00000083146' => array(
		'start' => '122520568',
		'end' => '122520674',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'Gm26497-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0000Y5_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000051851' => array(
				[maximum depth reached]
			),
			'ENSDARG00000076870' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Brain',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Muscle'
		)
	),
	'CIL_0000Y5_0002' => array(
		'genes_in_region' => array(
			'ENSG00000103335' => array(
				[maximum depth reached]
			),
			'ENSG00000182376' => array(
				[maximum depth reached]
			),
			'ENSG00000260121' => array(
				[maximum depth reached]
			),
			'ENSG00000265672' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Breast',
			(int) 4 => 'Colon',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Lung',
			(int) 9 => 'Muscle',
			(int) 10 => 'Ovary',
			(int) 11 => 'Placenta',
			(int) 12 => 'Testis',
			(int) 13 => 'Colon',
			(int) 14 => 'Kidney',
			(int) 15 => 'Liver',
			(int) 16 => 'Brain',
			(int) 17 => 'Breast',
			(int) 18 => 'Kidney',
			(int) 19 => 'Liver',
			(int) 20 => 'Lung',
			(int) 21 => 'Breast',
			(int) 22 => 'Lung',
			(int) 23 => 'Muscle',
			(int) 24 => 'Ovary',
			(int) 25 => 'Testis',
			(int) 26 => 'Muscle',
			(int) 27 => 'Brain',
			(int) 28 => 'Liver',
			(int) 29 => 'Muscle',
			(int) 30 => 'Testis',
			(int) 31 => 'Brain',
			(int) 32 => 'Muscle',
			(int) 33 => 'Testis',
			(int) 34 => 'Muscle',
			(int) 35 => 'Adipose',
			(int) 36 => 'Adrenal',
			(int) 37 => 'Brain',
			(int) 38 => 'Breast',
			(int) 39 => 'Colon',
			(int) 40 => 'Heart',
			(int) 41 => 'Kidney',
			(int) 42 => 'Liver',
			(int) 43 => 'Lung',
			(int) 44 => 'Muscle',
			(int) 45 => 'Ovary',
			(int) 46 => 'Placenta',
			(int) 47 => 'Testis',
			(int) 48 => 'Adrenal',
			(int) 49 => 'Bladder',
			(int) 50 => 'Breast',
			(int) 51 => 'Colon',
			(int) 52 => 'Kidney',
			(int) 53 => 'Liver',
			(int) 54 => 'Ovary',
			(int) 55 => 'Placenta',
			(int) 56 => 'Testis',
			(int) 57 => 'Adipose',
			(int) 58 => 'Adrenal',
			(int) 59 => 'Breast',
			(int) 60 => 'Colon',
			(int) 61 => 'Heart',
			(int) 62 => 'Kidney',
			(int) 63 => 'Liver',
			(int) 64 => 'Lung',
			(int) 65 => 'Ovary',
			(int) 66 => 'Lung'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0000Y5_0003',
		'tax_id' => '10090',
		'chromosome' => '8',
		'seq_start' => '122476143',
		'seq_end' => '122551329',
		'region_length' => '75186',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000049482-ENSMUSG00000014444'
	)
)
$gene_el = array(
	'ENST00000578292' => array(
		'Lung' => array(
			'average_FPKM' => '0.909',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSG00000265672'
$is_first = false
$tran_el = array(
	'Lung' => array(
		'average_FPKM' => '0.909',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENST00000578292'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0000Y5_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0000Y5_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000051851' => 'cytosolic thiouridylase subunit 2 homolog (S. pombe)',
		'ENSDARG00000076870' => 'piezo-type mechanosensitive ion channel component 1',
		'ENSG00000103335' => 'piezo-type mechanosensitive ion channel component 1',
		'ENSG00000174177' => 'cytosolic thiouridylase subunit 2 homolog (S. pombe)',
		'ENSG00000182376' => null,
		'ENSG00000224888' => null,
		'ENSG00000260121' => null,
		'ENSG00000260617' => null,
		'ENSG00000265672' => 'microRNA 4722',
		'ENSG00000278341' => null,
		'ENSMUSG00000014444' => 'piezo-type mechanosensitive ion channel component 1',
		'ENSMUSG00000049482' => 'cytosolic thiouridylase subunit 2 homolog (S. pombe)',
		'ENSMUSG00000065080' => 'predicted gene, 26497'
	),
	'gene_name_arr' => array(
		'ENSDARG00000051851' => 'ctu2',
		'ENSDARG00000076870' => 'piezo1',
		'ENSG00000103335' => 'PIEZO1',
		'ENSG00000174177' => 'CTU2',
		'ENSG00000182376' => 'RP5-1142A6.8',
		'ENSG00000224888' => 'RP5-1142A6.2',
		'ENSG00000260121' => 'RP5-1142A6.9',
		'ENSG00000260617' => 'RP5-1142A6.7',
		'ENSG00000265672' => 'MIR4722',
		'ENSG00000278341' => 'RP5-1142A6.10',
		'ENSMUSG00000014444' => 'Piezo1',
		'ENSMUSG00000049482' => 'Ctu2',
		'ENSMUSG00000065080' => 'Gm26497'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 3 => 'Adrenal',
		(int) 7 => 'Bladder',
		(int) 8 => 'Brain',
		(int) 15 => 'Breast',
		(int) 21 => 'Colon',
		(int) 26 => 'Heart',
		(int) 31 => 'Kidney',
		(int) 39 => 'Liver',
		(int) 48 => 'Lung',
		(int) 54 => 'Muscle',
		(int) 62 => 'Ovary',
		(int) 67 => 'Placenta',
		(int) 70 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 56,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENSDART00000073555' => array(
			'start' => '56556241',
			'end' => '56588975',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'ctu2-001'
		),
		'ENSDART00000132852' => array(
			'start' => '56577469',
			'end' => '56588958',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'ctu2-003'
		),
		'ENSDART00000147539' => array(
			'start' => '56556222',
			'end' => '56563742',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'ctu2-002'
		),
		'ENSDART00000108646' => array(
			'start' => '56589025',
			'end' => '56778717',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'piezo1-201'
		),
		'ENST00000301015' => array(
			'start' => '88715346',
			'end' => '88785211',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PIEZO1-001'
		),
		'ENST00000327397' => array(
			'start' => '88715491',
			'end' => '88717611',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PIEZO1-201'
		),
		'ENST00000419505' => array(
			'start' => '88715343',
			'end' => '88719890',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'PIEZO1-003'
		),
		'ENST00000466823' => array(
			'start' => '88717722',
			'end' => '88720258',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PIEZO1-017'
		),
		'ENST00000472168' => array(
			'start' => '88715816',
			'end' => '88716792',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-013'
		),
		'ENST00000474606' => array(
			'start' => '88722982',
			'end' => '88726344',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PIEZO1-009'
		),
		'ENST00000475586' => array(
			'start' => '88723947',
			'end' => '88726025',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-008'
		),
		'ENST00000484567' => array(
			'start' => '88715343',
			'end' => '88718318',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-004'
		),
		'ENST00000490756' => array(
			'start' => '88732464',
			'end' => '88732980',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-006'
		),
		'ENST00000491917' => array(
			'start' => '88727074',
			'end' => '88727843',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-007'
		),
		'ENST00000495568' => array(
			'start' => '88717023',
			'end' => '88720473',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-010'
		),
		'ENST00000497793' => array(
			'start' => '88718972',
			'end' => '88720387',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-011'
		),
		'ENST00000518793' => array(
			'start' => '88715343',
			'end' => '88716277',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PIEZO1-015'
		),
		'ENST00000521877' => array(
			'start' => '88715449',
			'end' => '88716212',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-014'
		),
		'ENST00000566414' => array(
			'start' => '88722523',
			'end' => '88723934',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'PIEZO1-016'
		),
		'ENST00000312060' => array(
			'start' => '88706483',
			'end' => '88715386',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CTU2-002'
		),
		'ENST00000453996' => array(
			'start' => '88706463',
			'end' => '88715386',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CTU2-001'
		),
		'ENST00000562011' => array(
			'start' => '88714985',
			'end' => '88715383',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CTU2-007'
		),
		'ENST00000564105' => array(
			'start' => '88706483',
			'end' => '88715320',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CTU2-003'
		),
		'ENST00000564584' => array(
			'start' => '88713480',
			'end' => '88715364',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CTU2-008'
		),
		'ENST00000564921' => array(
			'start' => '88706589',
			'end' => '88712382',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CTU2-009'
		),
		'ENST00000565071' => array(
			'start' => '88706545',
			'end' => '88710908',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CTU2-010'
		),
		'ENST00000566637' => array(
			'start' => '88709959',
			'end' => '88715386',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CTU2-005'
		),
		'ENST00000567316' => array(
			'start' => '88714682',
			'end' => '88715376',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CTU2-006'
		),
		'ENST00000567949' => array(
			'start' => '88706522',
			'end' => '88715386',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CTU2-004'
		),
		'ENST00000333666' => array(
			'start' => '88742767',
			'end' => '88745748',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.8-002'
		),
		'ENST00000567588' => array(
			'start' => '88742821',
			'end' => '88745464',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.8-001'
		),
		'ENST00000440406' => array(
			'start' => '88731180',
			'end' => '88739188',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.2-001'
		),
		'ENST00000567968' => array(
			'start' => '88736800',
			'end' => '88741425',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.2-003'
		),
		'ENST00000564984' => array(
			'start' => '88718615',
			'end' => '88720459',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.9-001'
		),
		'ENST00000566114' => array(
			'start' => '88741631',
			'end' => '88742367',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.7-001'
		),
		'ENST00000578292' => array(
			'start' => '88716278',
			'end' => '88716337',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR4722-201'
		),
		'ENST00000616106' => array(
			'start' => '88708956',
			'end' => '88710437',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'RP5-1142A6.10-001'
		),
		'ENSMUST00000067252' => array(
			'start' => '122481698',
			'end' => '122551329',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Piezo1-201'
		),
		'ENSMUST00000123671' => array(
			'start' => '122481721',
			'end' => '122484780',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Piezo1-008'
		),
		'ENSMUST00000126553' => array(
			'start' => '122483367',
			'end' => '122483869',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Piezo1-007'
		),
		'ENSMUST00000128383' => array(
			'start' => '122481982',
			'end' => '122499885',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'Piezo1-001'
		),
		'ENSMUST00000134304' => array(
			'start' => '122482041',
			'end' => '122483000',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Piezo1-006'
		),
		'ENSMUST00000148497' => array(
			'start' => '122485924',
			'end' => '122498204',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'Piezo1-002'
		),
		'ENSMUST00000152596' => array(
			'start' => '122484865',
			'end' => '122485624',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Piezo1-004'
		),
		'ENSMUST00000155803' => array(
			'start' => '122482080',
			'end' => '122482676',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Piezo1-005'
		),
		'ENSMUST00000156333' => array(
			'start' => '122481712',
			'end' => '122499886',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Piezo1-003'
		),
		'ENSMUST00000116412' => array(
			'start' => '122476143',
			'end' => '122483092',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ctu2-001'
		),
		'ENSMUST00000128472' => array(
			'start' => '122476693',
			'end' => '122478245',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ctu2-005'
		),
		'ENSMUST00000131934' => array(
			'start' => '122480922',
			'end' => '122481740',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ctu2-009'
		),
		'ENSMUST00000134127' => array(
			'start' => '122476220',
			'end' => '122479343',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ctu2-007'
		),
		'ENSMUST00000136253' => array(
			'start' => '122480957',
			'end' => '122481744',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ctu2-008'
		),
		'ENSMUST00000146634' => array(
			'start' => '122476213',
			'end' => '122478213',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ctu2-006'
		),
		'ENSMUST00000149925' => array(
			'start' => '122476243',
			'end' => '122478948',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ctu2-004'
		),
		'ENSMUST00000151855' => array(
			'start' => '122476209',
			'end' => '122484138',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'Ctu2-002'
		),
		'ENSMUST00000154099' => array(
			'start' => '122476213',
			'end' => '122481741',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ctu2-003'
		),
		'ENSMUST00000083146' => array(
			'start' => '122520568',
			'end' => '122520674',
			'transcript_biotype' => 'snRNA',
			'transcript_name' => 'Gm26497-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0000Y5_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0000Y5_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0000Y5_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000051851' => array(
				[maximum depth reached]
			),
			'ENSDARG00000076870' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Brain',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Muscle'
		)
	),
	'CIL_0000Y5_0002' => array(
		'genes_in_region' => array(
			'ENSG00000103335' => array(
				[maximum depth reached]
			),
			'ENSG00000182376' => array(
				[maximum depth reached]
			),
			'ENSG00000260121' => array(
				[maximum depth reached]
			),
			'ENSG00000265672' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Breast',
			(int) 4 => 'Colon',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Lung',
			(int) 9 => 'Muscle',
			(int) 10 => 'Ovary',
			(int) 11 => 'Placenta',
			(int) 12 => 'Testis',
			(int) 13 => 'Colon',
			(int) 14 => 'Kidney',
			(int) 15 => 'Liver',
			(int) 16 => 'Brain',
			(int) 17 => 'Breast',
			(int) 18 => 'Kidney',
			(int) 19 => 'Liver',
			(int) 20 => 'Lung',
			(int) 21 => 'Breast',
			(int) 22 => 'Lung',
			(int) 23 => 'Muscle',
			(int) 24 => 'Ovary',
			(int) 25 => 'Testis',
			(int) 26 => 'Muscle',
			(int) 27 => 'Brain',
			(int) 28 => 'Liver',
			(int) 29 => 'Muscle',
			(int) 30 => 'Testis',
			(int) 31 => 'Brain',
			(int) 32 => 'Muscle',
			(int) 33 => 'Testis',
			(int) 34 => 'Muscle',
			(int) 35 => 'Adipose',
			(int) 36 => 'Adrenal',
			(int) 37 => 'Brain',
			(int) 38 => 'Breast',
			(int) 39 => 'Colon',
			(int) 40 => 'Heart',
			(int) 41 => 'Kidney',
			(int) 42 => 'Liver',
			(int) 43 => 'Lung',
			(int) 44 => 'Muscle',
			(int) 45 => 'Ovary',
			(int) 46 => 'Placenta',
			(int) 47 => 'Testis',
			(int) 48 => 'Adrenal',
			(int) 49 => 'Bladder',
			(int) 50 => 'Breast',
			(int) 51 => 'Colon',
			(int) 52 => 'Kidney',
			(int) 53 => 'Liver',
			(int) 54 => 'Ovary',
			(int) 55 => 'Placenta',
			(int) 56 => 'Testis',
			(int) 57 => 'Adipose',
			(int) 58 => 'Adrenal',
			(int) 59 => 'Breast',
			(int) 60 => 'Colon',
			(int) 61 => 'Heart',
			(int) 62 => 'Kidney',
			(int) 63 => 'Liver',
			(int) 64 => 'Lung',
			(int) 65 => 'Ovary',
			(int) 66 => 'Lung'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000051851' => 'cytosolic thiouridylase subunit 2 homolog (S. pombe)',
	'ENSDARG00000076870' => 'piezo-type mechanosensitive ion channel component 1',
	'ENSG00000103335' => 'piezo-type mechanosensitive ion channel component 1',
	'ENSG00000174177' => 'cytosolic thiouridylase subunit 2 homolog (S. pombe)',
	'ENSG00000182376' => null,
	'ENSG00000224888' => null,
	'ENSG00000260121' => null,
	'ENSG00000260617' => null,
	'ENSG00000265672' => 'microRNA 4722',
	'ENSG00000278341' => null,
	'ENSMUSG00000014444' => 'piezo-type mechanosensitive ion channel component 1',
	'ENSMUSG00000049482' => 'cytosolic thiouridylase subunit 2 homolog (S. pombe)',
	'ENSMUSG00000065080' => 'predicted gene, 26497'
)
$gene_name_arr = array(
	'ENSDARG00000051851' => 'ctu2',
	'ENSDARG00000076870' => 'piezo1',
	'ENSG00000103335' => 'PIEZO1',
	'ENSG00000174177' => 'CTU2',
	'ENSG00000182376' => 'RP5-1142A6.8',
	'ENSG00000224888' => 'RP5-1142A6.2',
	'ENSG00000260121' => 'RP5-1142A6.9',
	'ENSG00000260617' => 'RP5-1142A6.7',
	'ENSG00000265672' => 'MIR4722',
	'ENSG00000278341' => 'RP5-1142A6.10',
	'ENSMUSG00000014444' => 'Piezo1',
	'ENSMUSG00000049482' => 'Ctu2',
	'ENSMUSG00000065080' => 'Gm26497'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0000Y5_0001',
			'tax_id' => '7955',
			'chromosome' => '7',
			'seq_start' => '56556222',
			'seq_end' => '56778717',
			'region_length' => '222495',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000051851-ENSDARG00000076870'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0000Y5_0002',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '88706463',
			'seq_end' => '88785211',
			'region_length' => '78748',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000174177-ENSG00000103335'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0000Y5_0003',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '122476143',
			'seq_end' => '122551329',
			'region_length' => '75186',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000049482-ENSMUSG00000014444'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 3 => 'Adrenal',
	(int) 7 => 'Bladder',
	(int) 8 => 'Brain',
	(int) 15 => 'Breast',
	(int) 21 => 'Colon',
	(int) 26 => 'Heart',
	(int) 31 => 'Kidney',
	(int) 39 => 'Liver',
	(int) 48 => 'Lung',
	(int) 54 => 'Muscle',
	(int) 62 => 'Ovary',
	(int) 67 => 'Placenta',
	(int) 70 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 56
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENSDART00000073555' => array(
		'start' => '56556241',
		'end' => '56588975',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'ctu2-001'
	),
	'ENSDART00000132852' => array(
		'start' => '56577469',
		'end' => '56588958',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'ctu2-003'
	),
	'ENSDART00000147539' => array(
		'start' => '56556222',
		'end' => '56563742',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'ctu2-002'
	),
	'ENSDART00000108646' => array(
		'start' => '56589025',
		'end' => '56778717',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'piezo1-201'
	),
	'ENST00000301015' => array(
		'start' => '88715346',
		'end' => '88785211',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PIEZO1-001'
	),
	'ENST00000327397' => array(
		'start' => '88715491',
		'end' => '88717611',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PIEZO1-201'
	),
	'ENST00000419505' => array(
		'start' => '88715343',
		'end' => '88719890',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'PIEZO1-003'
	),
	'ENST00000466823' => array(
		'start' => '88717722',
		'end' => '88720258',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PIEZO1-017'
	),
	'ENST00000472168' => array(
		'start' => '88715816',
		'end' => '88716792',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-013'
	),
	'ENST00000474606' => array(
		'start' => '88722982',
		'end' => '88726344',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PIEZO1-009'
	),
	'ENST00000475586' => array(
		'start' => '88723947',
		'end' => '88726025',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-008'
	),
	'ENST00000484567' => array(
		'start' => '88715343',
		'end' => '88718318',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-004'
	),
	'ENST00000490756' => array(
		'start' => '88732464',
		'end' => '88732980',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-006'
	),
	'ENST00000491917' => array(
		'start' => '88727074',
		'end' => '88727843',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-007'
	),
	'ENST00000495568' => array(
		'start' => '88717023',
		'end' => '88720473',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-010'
	),
	'ENST00000497793' => array(
		'start' => '88718972',
		'end' => '88720387',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-011'
	),
	'ENST00000518793' => array(
		'start' => '88715343',
		'end' => '88716277',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PIEZO1-015'
	),
	'ENST00000521877' => array(
		'start' => '88715449',
		'end' => '88716212',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-014'
	),
	'ENST00000566414' => array(
		'start' => '88722523',
		'end' => '88723934',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'PIEZO1-016'
	),
	'ENST00000312060' => array(
		'start' => '88706483',
		'end' => '88715386',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CTU2-002'
	),
	'ENST00000453996' => array(
		'start' => '88706463',
		'end' => '88715386',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CTU2-001'
	),
	'ENST00000562011' => array(
		'start' => '88714985',
		'end' => '88715383',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CTU2-007'
	),
	'ENST00000564105' => array(
		'start' => '88706483',
		'end' => '88715320',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CTU2-003'
	),
	'ENST00000564584' => array(
		'start' => '88713480',
		'end' => '88715364',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CTU2-008'
	),
	'ENST00000564921' => array(
		'start' => '88706589',
		'end' => '88712382',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CTU2-009'
	),
	'ENST00000565071' => array(
		'start' => '88706545',
		'end' => '88710908',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CTU2-010'
	),
	'ENST00000566637' => array(
		'start' => '88709959',
		'end' => '88715386',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CTU2-005'
	),
	'ENST00000567316' => array(
		'start' => '88714682',
		'end' => '88715376',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CTU2-006'
	),
	'ENST00000567949' => array(
		'start' => '88706522',
		'end' => '88715386',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CTU2-004'
	),
	'ENST00000333666' => array(
		'start' => '88742767',
		'end' => '88745748',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.8-002'
	),
	'ENST00000567588' => array(
		'start' => '88742821',
		'end' => '88745464',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.8-001'
	),
	'ENST00000440406' => array(
		'start' => '88731180',
		'end' => '88739188',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.2-001'
	),
	'ENST00000567968' => array(
		'start' => '88736800',
		'end' => '88741425',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.2-003'
	),
	'ENST00000564984' => array(
		'start' => '88718615',
		'end' => '88720459',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.9-001'
	),
	'ENST00000566114' => array(
		'start' => '88741631',
		'end' => '88742367',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.7-001'
	),
	'ENST00000578292' => array(
		'start' => '88716278',
		'end' => '88716337',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR4722-201'
	),
	'ENST00000616106' => array(
		'start' => '88708956',
		'end' => '88710437',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'RP5-1142A6.10-001'
	),
	'ENSMUST00000067252' => array(
		'start' => '122481698',
		'end' => '122551329',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Piezo1-201'
	),
	'ENSMUST00000123671' => array(
		'start' => '122481721',
		'end' => '122484780',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Piezo1-008'
	),
	'ENSMUST00000126553' => array(
		'start' => '122483367',
		'end' => '122483869',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Piezo1-007'
	),
	'ENSMUST00000128383' => array(
		'start' => '122481982',
		'end' => '122499885',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'Piezo1-001'
	),
	'ENSMUST00000134304' => array(
		'start' => '122482041',
		'end' => '122483000',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Piezo1-006'
	),
	'ENSMUST00000148497' => array(
		'start' => '122485924',
		'end' => '122498204',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'Piezo1-002'
	),
	'ENSMUST00000152596' => array(
		'start' => '122484865',
		'end' => '122485624',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Piezo1-004'
	),
	'ENSMUST00000155803' => array(
		'start' => '122482080',
		'end' => '122482676',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Piezo1-005'
	),
	'ENSMUST00000156333' => array(
		'start' => '122481712',
		'end' => '122499886',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Piezo1-003'
	),
	'ENSMUST00000116412' => array(
		'start' => '122476143',
		'end' => '122483092',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ctu2-001'
	),
	'ENSMUST00000128472' => array(
		'start' => '122476693',
		'end' => '122478245',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ctu2-005'
	),
	'ENSMUST00000131934' => array(
		'start' => '122480922',
		'end' => '122481740',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ctu2-009'
	),
	'ENSMUST00000134127' => array(
		'start' => '122476220',
		'end' => '122479343',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ctu2-007'
	),
	'ENSMUST00000136253' => array(
		'start' => '122480957',
		'end' => '122481744',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ctu2-008'
	),
	'ENSMUST00000146634' => array(
		'start' => '122476213',
		'end' => '122478213',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ctu2-006'
	),
	'ENSMUST00000149925' => array(
		'start' => '122476243',
		'end' => '122478948',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ctu2-004'
	),
	'ENSMUST00000151855' => array(
		'start' => '122476209',
		'end' => '122484138',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'Ctu2-002'
	),
	'ENSMUST00000154099' => array(
		'start' => '122476213',
		'end' => '122481741',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ctu2-003'
	),
	'ENSMUST00000083146' => array(
		'start' => '122520568',
		'end' => '122520674',
		'transcript_biotype' => 'snRNA',
		'transcript_name' => 'Gm26497-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0000Y5_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000051851' => array(
				[maximum depth reached]
			),
			'ENSDARG00000076870' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Brain',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Muscle'
		)
	),
	'CIL_0000Y5_0002' => array(
		'genes_in_region' => array(
			'ENSG00000103335' => array(
				[maximum depth reached]
			),
			'ENSG00000182376' => array(
				[maximum depth reached]
			),
			'ENSG00000260121' => array(
				[maximum depth reached]
			),
			'ENSG00000265672' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Breast',
			(int) 4 => 'Colon',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Lung',
			(int) 9 => 'Muscle',
			(int) 10 => 'Ovary',
			(int) 11 => 'Placenta',
			(int) 12 => 'Testis',
			(int) 13 => 'Colon',
			(int) 14 => 'Kidney',
			(int) 15 => 'Liver',
			(int) 16 => 'Brain',
			(int) 17 => 'Breast',
			(int) 18 => 'Kidney',
			(int) 19 => 'Liver',
			(int) 20 => 'Lung',
			(int) 21 => 'Breast',
			(int) 22 => 'Lung',
			(int) 23 => 'Muscle',
			(int) 24 => 'Ovary',
			(int) 25 => 'Testis',
			(int) 26 => 'Muscle',
			(int) 27 => 'Brain',
			(int) 28 => 'Liver',
			(int) 29 => 'Muscle',
			(int) 30 => 'Testis',
			(int) 31 => 'Brain',
			(int) 32 => 'Muscle',
			(int) 33 => 'Testis',
			(int) 34 => 'Muscle',
			(int) 35 => 'Adipose',
			(int) 36 => 'Adrenal',
			(int) 37 => 'Brain',
			(int) 38 => 'Breast',
			(int) 39 => 'Colon',
			(int) 40 => 'Heart',
			(int) 41 => 'Kidney',
			(int) 42 => 'Liver',
			(int) 43 => 'Lung',
			(int) 44 => 'Muscle',
			(int) 45 => 'Ovary',
			(int) 46 => 'Placenta',
			(int) 47 => 'Testis',
			(int) 48 => 'Adrenal',
			(int) 49 => 'Bladder',
			(int) 50 => 'Breast',
			(int) 51 => 'Colon',
			(int) 52 => 'Kidney',
			(int) 53 => 'Liver',
			(int) 54 => 'Ovary',
			(int) 55 => 'Placenta',
			(int) 56 => 'Testis',
			(int) 57 => 'Adipose',
			(int) 58 => 'Adrenal',
			(int) 59 => 'Breast',
			(int) 60 => 'Colon',
			(int) 61 => 'Heart',
			(int) 62 => 'Kidney',
			(int) 63 => 'Liver',
			(int) 64 => 'Lung',
			(int) 65 => 'Ovary',
			(int) 66 => 'Lung'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0000Y5_0003',
		'tax_id' => '10090',
		'chromosome' => '8',
		'seq_start' => '122476143',
		'seq_end' => '122551329',
		'region_length' => '75186',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000049482-ENSMUSG00000014444'
	)
)
$gene_el = array(
	'ENST00000578292' => array(
		'Lung' => array(
			'average_FPKM' => '0.909',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSG00000265672'
$is_first = false
$tran_el = array(
	'Lung' => array(
		'average_FPKM' => '0.909',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENST00000578292'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSMUSG00000049482-ENSMUSG00000014444		CGP	10090	8:122476143-122551329
Gene		Transcript	Position	Biotype

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

Loading