C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000174243 DDX23 9606 - 12:48829764-48852842 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000308025 DDX23-001 48829764-48852163 protein_coding
  ENST00000547135 DDX23-003 48834458-48852141 nonsense_mediated_decay
  ENST00000547165 DDX23-009 48836176-48838061 retained_intron
  ENST00000547290 DDX23-013 48832508-48834760 retained_intron
  ENST00000547842 DDX23-017 48832003-48832820 retained_intron
  ENST00000549795 DDX23-015 48831829-48833345 retained_intron
  ENST00000550834 DDX23-019 48830057-48839855 protein_coding
  ENST00000551098 DDX23-007 48837533-48852138 retained_intron
  ENST00000551189 DDX23-010 48836772-48837700 retained_intron
  ENST00000551331 DDX23-016 48831214-48832915 retained_intron
  ENST00000551468 DDX23-005 48840013-48852141 protein_coding
  ENST00000552069 DDX23-011 48836642-48837332 retained_intron
  ENST00000552369 DDX23-006 48839487-48852141 processed_transcript
  ENST00000552512 DDX23-004 48838015-48852141 protein_coding
  ENST00000552555 DDX23-018 48840129-48852842 processed_transcript
  ENST00000552802 DDX23-012 48832422-48836680 nonsense_mediated_decay
  ENST00000553065 DDX23-014 48832523-48833561 retained_intron
  ENST00000553182 DDX23-008 48837292-48852141 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308025ENST00000547165ENST00000550834ENST00000551098ENST00000552369ENST00000552512
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308025 12.824±0.00 32.409±0.00 4.023±0.00 11.252±5.11 11.196±4.43 14.770±7.79 6.522±4.07 11.669±5.51 8.999±1.83 17.340±9.43 11.747±8.34 20.606±10.11 22.660±4.72 22.734±8.63
ENST00000547165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.064±0.00 N/A N/A N/A
ENST00000550834 N/A N/A N/A 16.906±0.00 14.217±0.00 16.124±0.00 N/A N/A 7.243±0.00 17.238±0.00 N/A N/A N/A N/A
ENST00000551098 N/A N/A N/A N/A 3.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.690±0.00 19.051±0.00
ENST00000552512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.153±0.00 19.285±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DO CIL_0003DO_0002 CGP 12:48813794-48852842
CIL_00000F CIL_00000F_0001 CGP 12:48829764-48865898

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000354 IC cis assembly of pre-catalytic spliceosome
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0004004 TAS ATP-dependent RNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005682 IDA U5 snRNP
GO:0005739 IDA mitochondrion
GO:0005886 IDA plasma membrane
GO:0006200 TAS ATP catabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021945 ddx23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 protein_coding Danio_rerio
ENSMUSG00000003360 Ddx23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 protein_coding Mus_musculus

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