C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003360 Ddx23 10090 - 15:98645134-98662889 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003450 Ddx23-001 98645134-98662889 protein_coding
  ENSMUST00000159170 Ddx23-005 98657893-98662889 retained_intron
  ENSMUST00000159423 Ddx23-003 98648003-98662881 retained_intron
  ENSMUST00000160506 Ddx23-002 98647991-98662884 retained_intron
  ENSMUST00000161030 Ddx23-004 98652219-98662884 retained_intron
  ENSMUST00000162384 Ddx23-006 98656679-98662858 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003450ENSMUST00000159423ENSMUST00000160506
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003450 14.423±2.43 12.084±2.74 12.386±0.53 26.233±17.99 7.407±1.67 14.501±2.10 7.498±0.56 11.666±1.84 12.223±6.49 14.989±1.29 20.373±3.29 18.817±13.28 21.660±12.10 9.445±4.50
ENSMUST00000159423 N/A N/A N/A N/A 2.591±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160506 N/A N/A N/A N/A 4.518±0.00 N/A N/A N/A N/A N/A N/A 4.249±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DO CIL_0003DO_0003 CGP 15:98632220-98662889
CIL_00000F CIL_00000F_0002 CGP 15:98645134-98677461

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005682 IEA U5 snRNP
GO:0005739 IEA mitochondrion
GO:0005886 IEA plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021945 ddx23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 protein_coding Danio_rerio
ENSG00000174243 DDX23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 protein_coding Homo_sapiens

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