C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003DO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000001881-ENSDARG00000021945 CGP 7955 23:14209498-14328496
GeneTranscriptPositionBiotype
ENSDARG00000001881 (cacnb3a)
calcium channel, voltage-dependent, beta 3a 		ENSDART00000087280 (cacnb3a-001) 14209498-14292297 protein_coding
ENSDART00000143529 (cacnb3a-002) 14209498-14254225 retained_intron
ENSDARG00000021945 (ddx23)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 		ENSDART00000019620 (ddx23-001) 14305537-14328496 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003DO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167535-ENSG00000174243 CGP 9606 12:48813794-48852842
GeneTranscriptPositionBiotype
ENSG00000167535 (CACNB3)
calcium channel, voltage-dependent, beta 3 subunit 		ENST00000301050 (CACNB3-001) 48818731-48828941 protein_coding
ENST00000536187 (CACNB3-004) 48815587-48828219 protein_coding
ENST00000540990 (CACNB3-002) 48814451-48828200 protein_coding
ENST00000547230 (CACNB3-018) 48818909-48828941 protein_coding
ENST00000547392 (CACNB3-006) 48818504-48828336 protein_coding
ENST00000547693 (CACNB3-020) 48813794-48823984 retained_intron
ENST00000547818 (CACNB3-015) 48818484-48826518 protein_coding
ENST00000548279 (CACNB3-017) 48818787-48824697 protein_coding
ENST00000548860 (CACNB3-005) 48814893-48828941 retained_intron
ENST00000548874 (CACNB3-009) 48815591-48825484 nonsense_mediated_decay
ENST00000549226 (CACNB3-003) 48814480-48825161 retained_intron
ENST00000549971 (CACNB3-014) 48818406-48824312 processed_transcript
ENST00000550064 (CACNB3-024) 48817866-48825720 protein_coding
ENST00000550168 (CACNB3-011) 48815602-48824733 processed_transcript
ENST00000550190 (CACNB3-022) 48823446-48828941 protein_coding
ENST00000550391 (CACNB3-008) 48814432-48825724 nonsense_mediated_decay
ENST00000550483 (CACNB3-023) 48823779-48826518 nonsense_mediated_decay
ENST00000550771 (CACNB3-016) 48818793-48823961 retained_intron
ENST00000551544 (CACNB3-019) 48818909-48828941 nonsense_mediated_decay
ENST00000551716 (CACNB3-010) 48815600-48823972 retained_intron
ENST00000552022 (CACNB3-013) 48818386-48824733 processed_transcript
ENST00000552465 (CACNB3-012) 48815612-48817312 retained_intron
ENST00000552480 (CACNB3-021) 48825115-48827868 retained_intron
ENST00000552812 (CACNB3-007) 48819778-48821489 retained_intron
ENSG00000174243 (DDX23)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 		ENST00000308025 (DDX23-001) 48829764-48852163 protein_coding
ENST00000547135 (DDX23-003) 48834458-48852141 nonsense_mediated_decay
ENST00000547165 (DDX23-009) 48836176-48838061 retained_intron
ENST00000547290 (DDX23-013) 48832508-48834760 retained_intron
ENST00000547842 (DDX23-017) 48832003-48832820 retained_intron
ENST00000549795 (DDX23-015) 48831829-48833345 retained_intron
ENST00000550834 (DDX23-019) 48830057-48839855 protein_coding
ENST00000551098 (DDX23-007) 48837533-48852138 retained_intron
ENST00000551189 (DDX23-010) 48836772-48837700 retained_intron
ENST00000551331 (DDX23-016) 48831214-48832915 retained_intron
ENST00000551468 (DDX23-005) 48840013-48852141 protein_coding
ENST00000552069 (DDX23-011) 48836642-48837332 retained_intron
ENST00000552369 (DDX23-006) 48839487-48852141 processed_transcript
ENST00000552512 (DDX23-004) 48838015-48852141 protein_coding
ENST00000552555 (DDX23-018) 48840129-48852842 processed_transcript
ENST00000552802 (DDX23-012) 48832422-48836680 nonsense_mediated_decay
ENST00000553065 (DDX23-014) 48832523-48833561 retained_intron
ENST00000553182 (DDX23-008) 48837292-48852141 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0003DO_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003352-ENSMUSG00000003360 CGP 10090 15:98632220-98662889
GeneTranscriptPositionBiotype
ENSMUSG00000003352 (Cacnb3)
calcium channel, voltage-dependent, beta 3 subunit 		ENSMUST00000003442 (Cacnb3-201) 98634764-98644530 protein_coding
ENSMUST00000109150 (Cacnb3-202) 98632220-98644530 protein_coding
ENSMUSG00000003360 (Ddx23)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 		ENSMUST00000003450 (Ddx23-001) 98645134-98662889 protein_coding
ENSMUST00000159170 (Ddx23-005) 98657893-98662889 retained_intron
ENSMUST00000159423 (Ddx23-003) 98648003-98662881 retained_intron
ENSMUST00000160506 (Ddx23-002) 98647991-98662884 retained_intron
ENSMUST00000161030 (Ddx23-004) 98652219-98662884 retained_intron
ENSMUST00000162384 (Ddx23-006) 98656679-98662858 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DO_0001ENSDARG00000001881ENSDART00000087280ENSDART00000143529ENSDARG00000021945ENSDART00000019620CIL_0003DO_0002ENSG00000167535ENST00000301050ENST00000536187ENST00000540990ENST00000547230ENST00000547392ENST00000547693ENST00000547818ENST00000548279ENST00000548860ENST00000548874ENST00000549226ENST00000549971ENST00000550064ENST00000550168ENST00000550190ENST00000550391ENST00000550483ENST00000550771ENST00000551544ENST00000551716ENST00000552022ENST00000552465ENST00000552480ENST00000552812ENSG00000174243ENST00000308025ENST00000547135ENST00000547165ENST00000547290ENST00000547842ENST00000549795ENST00000550834ENST00000551098ENST00000551189ENST00000551331ENST00000551468ENST00000552069ENST00000552369ENST00000552512ENST00000552555ENST00000552802ENST00000553065ENST00000553182CIL_0003DO_0003ENSMUSG00000003352ENSMUST00000003442ENSMUST00000109150ENSMUSG00000003360ENSMUST00000003450ENSMUST00000159170ENSMUST00000159423ENSMUST00000160506ENSMUST00000161030ENSMUST00000162384
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003DO_0001ENSDARG00000001881ENSDART00000087280ENSDART00000143529ENSDARG00000021945ENSDART00000019620CIL_0003DO_0002ENSG00000167535ENST00000301050ENST00000536187ENST00000540990ENST00000547230ENST00000547392ENST00000547818ENST00000548279ENST00000550190ENST00000552480ENST00000552812ENSG00000174243ENST00000308025ENST00000547165ENST00000550834ENST00000551098ENST00000552369ENST00000552512CIL_0003DO_0003ENSMUSG00000003352ENSMUST00000003442ENSMUST00000109150ENSMUSG00000003360ENSMUST00000003450ENSMUST00000159423ENSMUST00000160506
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000001881 ENSDART00000087280 N/A N/A N/A 0.347±0.00 N/A N/A 0.023±0.00 0.079±0.00 0.016±0.00 N/A 0.152±0.00 N/A N/A N/A
ENSDART00000143529 N/A N/A N/A 1.896±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000021945 ENSDART00000019620 N/A N/A N/A 13.633±8.33 N/A N/A 7.534±2.59 13.363±1.99 1.291±0.00 N/A 3.606±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167535 ENST00000301050 1.779±0.00 0.914±0.00 N/A 5.198±1.14 1.123±0.00 1.948±1.39 0.526±0.00 1.776±0.00 0.196±0.00 2.859±0.00 N/A 19.752±17.44 2.835±0.22 3.379±0.00
ENST00000536187 N/A N/A 0.480±0.00 N/A N/A 2.051±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540990 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A 1.923±1.00 N/A 2.750±0.00
ENST00000547230 1.353±0.00 2.090±0.00 0.130±0.00 13.844±0.00 3.084±0.00 8.201±0.00 0.553±0.00 1.607±0.00 0.220±0.00 0.292±0.00 N/A 11.404±8.33 N/A 11.684±0.00
ENST00000547392 N/A N/A N/A N/A N/A N/A 0.253±0.00 N/A N/A N/A 0.707±0.00 N/A N/A N/A
ENST00000547693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547818 N/A N/A N/A N/A 2.127±0.00 N/A 0.294±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000548279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.846±0.00 N/A N/A N/A
ENST00000548860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550190 3.629±0.00 N/A N/A 15.426±0.68 5.634±0.00 8.646±0.00 N/A N/A N/A N/A N/A N/A N/A 17.983±0.00
ENST00000550391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552480 N/A N/A 0.570±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 6.012±0.00 4.084±0.00 N/A
ENST00000552812 N/A N/A N/A N/A N/A 1.051±0.00 N/A N/A N/A N/A N/A 0.602±0.00 N/A N/A
ENSG00000174243 ENST00000308025 12.824±0.00 32.409±0.00 4.023±0.00 11.252±5.11 11.196±4.43 14.770±7.79 6.522±4.07 11.669±5.51 8.999±1.83 17.340±9.43 11.747±8.34 20.606±10.11 22.660±4.72 22.734±8.63
ENST00000547135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.064±0.00 N/A N/A N/A
ENST00000547290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550834 N/A N/A N/A 16.906±0.00 14.217±0.00 16.124±0.00 N/A N/A 7.243±0.00 17.238±0.00 N/A N/A N/A N/A
ENST00000551098 N/A N/A N/A N/A 3.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.690±0.00 19.051±0.00
ENST00000552512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.153±0.00 19.285±0.00
ENST00000552555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003352 ENSMUST00000003442 2.597±1.43 2.820±1.40 7.179±0.04 35.790±28.60 3.713±0.98 3.872±0.37 0.618±0.12 1.183±0.15 0.131±0.06 2.096±0.32 0.549±0.03 7.651±3.54 4.683±1.52 0.270±0.14
ENSMUST00000109150 13.741±13.23 4.450±2.41 29.070±2.36 84.307±1.51 32.036±12.51 32.001±10.40 0.430±0.16 4.458±2.57 0.280±0.06 8.069±4.05 0.663±0.18 30.505±13.62 2.705±0.53 0.350±0.34
ENSMUSG00000003360 ENSMUST00000003450 14.423±2.43 12.084±2.74 12.386±0.53 26.233±17.99 7.407±1.67 14.501±2.10 7.498±0.56 11.666±1.84 12.223±6.49 14.989±1.29 20.373±3.29 18.817±13.28 21.660±12.10 9.445±4.50
ENSMUST00000159170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159423 N/A N/A N/A N/A 2.591±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160506 N/A N/A N/A N/A 4.518±0.00 N/A N/A N/A N/A N/A N/A 4.249±0.00 N/A N/A
ENSMUST00000161030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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