C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000547135 DDX23-003 ENSG00000174243 9606 - 12:48834458-48852141 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DO CIL_0003DO_0002 CGP 12:48813794-48852842
CIL_00000F CIL_00000F_0001 CGP 12:48829764-48865898

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000354 IC cis assembly of pre-catalytic spliceosome
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 IC mRNA splicing, via spliceosome
GO:0004004 TAS ATP-dependent RNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005682 IDA U5 snRNP
GO:0005739 IDA mitochondrion
GO:0005886 IDA plasma membrane
GO:0006200 TAS ATP catabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160506 Ddx23-002 retained_intron Mus_musculus 0 604
ENSMUST00000003450 Ddx23-001 protein_coding Mus_musculus 0 604
ENSMUST00000161030 Ddx23-004 retained_intron Mus_musculus 0 457
ENSMUST00000159423 Ddx23-003 retained_intron Mus_musculus 0 457
ENSMUST00000159170 Ddx23-005 retained_intron Mus_musculus 0 340
ENSMUST00000162384 Ddx23-006 protein_coding Mus_musculus 0 309

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