C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cholinergic receptor, nicotinic, alpha 9 (neuronal)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000174343 CHRNA9 9606 + 4:40335329-40355217 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310169 CHRNA9-001 40335329-40355217 protein_coding
  ENST00000502377 CHRNA9-003 40337286-40348139 processed_transcript
  ENST00000509518 CHRNA9-002 40349587-40354094 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLungOvaryPlacentaTestisENST00000310169ENST00000509518
Transcript ID Adrenal Brain Breast Heart Kidney Lung Ovary Placenta Testis
ENST00000310169 0.038±0.00 0.015±0.00 0.010±0.00 0.005±0.00 N/A 0.009±0.00 0.021±0.01 0.060±0.03 0.015±0.00
ENST00000509518 0.091±0.00 0.013±0.00 N/A N/A 0.120±0.00 N/A N/A N/A 0.082±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LL CIL_0005LL_0002 CGP 4:40191053-40355217

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004889 IEA acetylcholine-activated cation-selective channel activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005262 IEA calcium channel activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005892 IEA acetylcholine-gated channel complex
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006812 IEA cation transport
GO:0007204 IGI positive regulation of cytosolic calcium ion concentration
GO:0007268 TAS synaptic transmission
GO:0007605 IEA sensory perception of sound
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0042472 IEA inner ear morphogenesis
GO:0045211 IEA postsynaptic membrane
GO:0050910 IEA detection of mechanical stimulus involved in sensory perception of sound
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011029 CHRNA9 (1 of 2) cholinergic receptor, nicotinic, alpha 9 (neuronal) protein_coding Danio_rerio
ENSDARG00000054680 chrna9 cholinergic receptor, nicotinic, alpha 9 protein_coding Danio_rerio
ENSMUSG00000029205 Chrna9 cholinergic receptor, nicotinic, alpha polypeptide 9 protein_coding Mus_musculus

Loading