C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cholinergic receptor, nicotinic, alpha polypeptide 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029205 Chrna9 10090 + 5:65934921-65977326 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031108 Chrna9-001 65967124-65977326 protein_coding
  ENSMUST00000123357 Chrna9-003 65934921-65969160 protein_coding
  ENSMUST00000126313 Chrna9-007 65975896-65977140 processed_transcript
  ENSMUST00000128613 Chrna9-006 65934948-65935914 retained_intron
  ENSMUST00000141080 Chrna9-004 65934975-65944350 processed_transcript
  ENSMUST00000145599 Chrna9-005 65934973-65944342 processed_transcript
  ENSMUST00000153624 Chrna9-002 65934928-65971238 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031108ENSMUST00000126313ENSMUST00000128613ENSMUST00000145599ENSMUST00000153624
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031108 N/A 0.011±0.00 0.004±0.00 0.054±0.02 N/A N/A N/A 0.192±0.17 0.079±0.05 N/A 0.182±0.03 0.327±0.00
ENSMUST00000126313 0.144±0.00 0.034±0.01 0.013±0.00 N/A 0.140±0.01 0.079±0.01 N/A 0.104±0.00 0.107±0.04 0.259±0.08 0.728±0.21 1.760±0.00
ENSMUST00000128613 N/A N/A N/A 0.124±0.04 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145599 N/A N/A N/A 0.525±0.13 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153624 N/A N/A N/A 0.091±0.03 0.057±0.00 N/A 0.012±0.00 0.250±0.00 0.075±0.03 N/A N/A 1.303±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LL CIL_0005LL_0003 CGP 5:65863569-65977326

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004889 IMP acetylcholine-activated cation-selective channel activity
GO:0005515 IPI protein binding
GO:0005892 IEA acetylcholine-gated channel complex
GO:0006812 IMP cation transport
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0007605 IEA sensory perception of sound
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0042472 IMP inner ear morphogenesis
GO:0045211 IEA postsynaptic membrane
GO:0050910 IMP detection of mechanical stimulus involved in sensory perception of sound
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011029 CHRNA9 (1 of 2) cholinergic receptor, nicotinic, alpha 9 (neuronal) protein_coding Danio_rerio
ENSDARG00000054680 chrna9 cholinergic receptor, nicotinic, alpha 9 protein_coding Danio_rerio
ENSG00000174343 CHRNA9 cholinergic receptor, nicotinic, alpha 9 (neuronal) protein_coding Homo_sapiens

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