C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, alpha 9 (neuronal)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310169 CHRNA9-001 ENSG00000174343 9606 + 4:40335329-40355217 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLungOvaryPlacentaTestisENST00000310169
Transcript ID Adrenal Brain Breast Heart Lung Ovary Placenta Testis
ENST00000310169 0.038±0.00 0.015±0.00 0.010±0.00 0.005±0.00 0.009±0.00 0.021±0.01 0.060±0.03 0.015±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LL CIL_0005LL_0002 CGP 4:40191053-40355217

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004889 IEA acetylcholine-activated cation-selective channel activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005262 IEA calcium channel activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005892 IEA acetylcholine-gated channel complex
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006812 IEA cation transport
GO:0007204 IGI positive regulation of cytosolic calcium ion concentration
GO:0007268 TAS synaptic transmission
GO:0007605 IEA sensory perception of sound
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0042472 IEA inner ear morphogenesis
GO:0045211 IEA postsynaptic membrane
GO:0050910 IEA detection of mechanical stimulus involved in sensory perception of sound
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031108 Chrna9-001 protein_coding Mus_musculus 0 1511
ENSMUST00000153624 Chrna9-002 protein_coding Mus_musculus 0 771
ENSMUST00000126313 Chrna9-007 processed_transcript Mus_musculus 0 418

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