C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ets variant 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000175832 ETV4 9606 - 17:43527844-43579620 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319349 ETV4-001 43527844-43546432 protein_coding
  ENST00000393664 ETV4-005 43527846-43545671 protein_coding
  ENST00000538265 ETV4-201 43527844-43545937 protein_coding
  ENST00000545089 ETV4-004 43528280-43545713 protein_coding
  ENST00000545954 ETV4-002 43528278-43546323 protein_coding
  ENST00000585508 ETV4-007 43533344-43546315 retained_intron
  ENST00000586764 ETV4-010 43544976-43579620 protein_coding
  ENST00000586826 ETV4-006 43528499-43530434 protein_coding
  ENST00000587151 ETV4-009 43536316-43546025 retained_intron
  ENST00000590236 ETV4-008 43532930-43545402 retained_intron
  ENST00000591713 ETV4-003 43528337-43545899 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaENST00000393664ENST00000538265
Transcript ID Ovary Placenta
ENST00000393664 N/A 6.111±0.00
ENST00000538265 5.486±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000996 CIL_000996_0001 VISTA 17:43262867-43863532
CIL_00090X CIL_00090X_0001 VISTA 17:43291368-43892559
CIL_000997 CIL_000997_0001 VISTA 17:43327654-43928719
CIL_00047L CIL_00047L_0001 CGP 17:43398959-43544463
CIL_000495 CIL_000495_0001 CGP 17:43483865-43579620
CIL_00048L CIL_00048L_0001 CGP 17:43527844-43661954

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IC RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0008045 IEA motor neuron axon guidance
GO:0010628 IEA positive regulation of gene expression
GO:0030154 IBA cell differentiation
GO:0033600 IEA negative regulation of mammary gland epithelial cell proliferation
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IC positive regulation of transcription from RNA polymerase II promoter
GO:0048863 IEA stem cell differentiation
GO:0060444 IEA branching involved in mammary gland duct morphogenesis
GO:0060762 IEA regulation of branching involved in mammary gland duct morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018303 etv4 ets variant gene 4 protein_coding Danio_rerio
ENSMUSG00000017724 Etv4 ets variant 4 protein_coding Mus_musculus

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