C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ets variant 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000545954 ETV4-002 ENSG00000175832 9606 - 17:43528278-43546323 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000996 CIL_000996_0001 VISTA 17:43262867-43863532
CIL_00090X CIL_00090X_0001 VISTA 17:43291368-43892559
CIL_000997 CIL_000997_0001 VISTA 17:43327654-43928719
CIL_00047L CIL_00047L_0001 CGP 17:43398959-43544463
CIL_000495 CIL_000495_0001 CGP 17:43483865-43579620
CIL_00048L CIL_00048L_0001 CGP 17:43527844-43661954

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IC RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0030154 IBA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IC positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017868 Etv4-002 protein_coding Mus_musculus 0 1842
ENSMUST00000164750 Etv4-201 protein_coding Mus_musculus 0 1829
ENSMUST00000107176 Etv4-001 protein_coding Mus_musculus 0 1731
ENSMUST00000129160 Etv4-011 processed_transcript Mus_musculus 0 874
ENSMUST00000132040 Etv4-003 processed_transcript Mus_musculus 0 830
ENSMUST00000131862 Etv4-010 processed_transcript Mus_musculus 0 702
ENSMUST00000140970 Etv4-004 processed_transcript Mus_musculus 0 695
ENSMUST00000129995 Etv4-008 processed_transcript Mus_musculus 0 673
ENSMUST00000149099 Etv4-005 processed_transcript Mus_musculus 0 584
ENSMUST00000137179 Etv4-006 processed_transcript Mus_musculus 0 468
ENSMUST00000131117 Etv4-009 processed_transcript Mus_musculus 0 416

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