C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sphingosine kinase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000176170 SPHK1 9606 + 17:76376584-76387860 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323374 SPHK1-001 76384650-76387855 protein_coding
  ENST00000392496 SPHK1-004 76385292-76387857 protein_coding
  ENST00000545180 SPHK1-006 76376661-76387860 protein_coding
  ENST00000587167 SPHK1-011 76386023-76386561 retained_intron
  ENST00000588682 SPHK1-009 76381771-76386887 protein_coding
  ENST00000590379 SPHK1-010 76383919-76386469 protein_coding
  ENST00000590959 SPHK1-003 76384621-76387860 protein_coding
  ENST00000591651 SPHK1-008 76376584-76385991 protein_coding
  ENST00000591762 SPHK1-005 76382977-76387856 retained_intron
  ENST00000592299 SPHK1-002 76384609-76387860 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLungENST00000323374ENST00000392496ENST00000592299
Transcript ID Adrenal Colon Lung
ENST00000323374 N/A N/A 12.643±0.00
ENST00000392496 18.946±0.00 N/A 16.926±0.00
ENST00000592299 N/A 4.707±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0001 VISTA 17:75822026-76422503
CIL_0001IJ CIL_0001IJ_0001 CGP 17:76274049-76384521
CIL_00009I CIL_00009I_0001 CGP 17:76309486-76387860
CIL_00079O CIL_00079O_0001 CGP 17:76376584-76453206

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000287 ISS magnesium ion binding
GO:0001568 IEA blood vessel development
GO:0001934 IEA positive regulation of protein phosphorylation
GO:0001956 IEA positive regulation of neurotransmitter secretion
GO:0003677 IDA DNA binding
GO:0003951 IEA NAD+ kinase activity
GO:0004143 IEA diacylglycerol kinase activity
GO:0005515 IPI protein binding
GO:0005516 IDA calmodulin binding
GO:0005524 IDA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0006457 TAS protein folding
GO:0006665 TAS sphingolipid metabolic process
GO:0006670 IDA sphingosine metabolic process
GO:0006954 IEA inflammatory response
GO:0007165 TAS signal transduction
GO:0007205 IEA protein kinase C-activating G-protein coupled receptor signaling pathway
GO:0007420 IEA brain development
GO:0007565 IEA female pregnancy
GO:0008021 IEA synaptic vesicle
GO:0008284 IEA positive regulation of cell proliferation
GO:0008481 IDA sphinganine kinase activity
GO:0009267 IEA cellular response to starvation
GO:0010803 IDA regulation of tumor necrosis factor-mediated signaling pathway
GO:0010976 IEA positive regulation of neuron projection development
GO:0014070 IEA response to organic cyclic compound
GO:0014075 IEA response to amine
GO:0016310 IEA phosphorylation
GO:0017050 IDA D-erythro-sphingosine kinase activity
GO:0019371 IEA cyclooxygenase pathway
GO:0019722 IDA calcium-mediated signaling
GO:0030148 TAS sphingolipid biosynthetic process
GO:0030307 IDA positive regulation of cell growth
GO:0030335 IDA positive regulation of cell migration
GO:0030424 IEA axon
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0032026 IEA response to magnesium ion
GO:0032570 IEA response to progesterone
GO:0032651 IEA regulation of interleukin-1 beta production
GO:0033198 IEA response to ATP
GO:0035556 TAS intracellular signal transduction
GO:0042346 IMP positive regulation of NF-kappaB import into nucleus
GO:0043005 IEA neuron projection
GO:0043066 TAS negative regulation of apoptotic process
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045766 IDA positive regulation of angiogenesis
GO:0045931 IDA positive regulation of mitotic cell cycle
GO:0045987 IDA positive regulation of smooth muscle contraction
GO:0046521 NAS sphingoid catabolic process
GO:0046834 IEA lipid phosphorylation
GO:0048146 IDA positive regulation of fibroblast proliferation
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051092 IMP positive regulation of NF-kappaB transcription factor activity
GO:0051721 IPI protein phosphatase 2A binding
GO:0070301 IEA cellular response to hydrogen peroxide
GO:0070555 IEA response to interleukin-1
GO:0071363 IEA cellular response to growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079139 SPHK1 sphingosine kinase 1 protein_coding Danio_rerio
ENSMUSG00000061878 Sphk1 sphingosine kinase 1 protein_coding Mus_musculus

Loading