C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromodomain helicase DNA binding protein 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000177200 CHD9 9606 + 16:53055033-53329150 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000219084 CHD9-019 53235137-53327451 retained_intron
  ENST00000398510 CHD9-020 53156003-53327451 protein_coding
  ENST00000447540 CHD9-201 53055033-53327501 protein_coding
  ENST00000561869 CHD9-008 53055039-53121980 processed_transcript
  ENST00000562785 CHD9-011 53156006-53157462 protein_coding
  ENST00000562791 CHD9-014 53209780-53226403 processed_transcript
  ENST00000562806 CHD9-016 53249901-53254671 retained_intron
  ENST00000563410 CHD9-010 53131134-53156248 protein_coding
  ENST00000564255 CHD9-006 53157164-53250175 retained_intron
  ENST00000564582 CHD9-009 53099180-53122178 processed_transcript
  ENST00000564600 CHD9-017 53314506-53321563 nonsense_mediated_decay
  ENST00000564641 CHD9-018 53314867-53324141 nonsense_mediated_decay
  ENST00000564845 CHD9-003 53130921-53327451 protein_coding
  ENST00000565119 CHD9-015 53245733-53250649 processed_transcript
  ENST00000565442 CHD9-012 53208451-53222755 protein_coding
  ENST00000565803 CHD9-004 53207989-53268127 protein_coding
  ENST00000565832 CHD9-002 53099160-53222755 protein_coding
  ENST00000566029 CHD9-001 53055033-53329150 protein_coding
  ENST00000569225 CHD9-005 53235137-53248163 retained_intron
  ENST00000569794 CHD9-013 53208032-53209813 processed_transcript
  ENST00000615216 CHD9-202 53055033-53327501 protein_coding
  ENST00000622617 CHD9-203 53156543-53324895 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000219084ENST00000398510ENST00000447540ENST00000564255ENST00000564845ENST00000565832ENST00000566029ENST00000615216ENST00000622617
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000219084 1.701±0.00 1.684±0.00 1.529±0.00 2.511±0.64 2.570±0.71 1.874±0.00 1.414±0.14 2.766±1.69 1.062±0.00 4.573±2.18 1.101±0.54 3.292±1.43 0.593±0.09 1.541±0.40
ENST00000398510 N/A 0.697±0.00 1.513±0.00 1.958±0.00 2.232±0.00 N/A N/A N/A 3.533±0.00 N/A N/A N/A 0.475±0.04 N/A
ENST00000447540 0.963±0.00 N/A N/A 0.742±0.00 0.434±0.00 0.838±0.00 0.794±0.00 N/A N/A N/A N/A 1.311±0.00 N/A N/A
ENST00000564255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.819±0.00 1.759±0.00 2.016±0.00
ENST00000564845 N/A N/A N/A N/A N/A 2.195±0.00 0.652±0.00 0.994±0.00 2.243±0.00 N/A N/A N/A N/A N/A
ENST00000565832 N/A N/A 9.277±0.00 25.948±0.00 11.398±0.00 11.726±0.00 7.489±0.00 4.465±0.00 16.697±0.00 N/A N/A N/A N/A N/A
ENST00000566029 0.415±0.00 N/A N/A 0.529±0.00 N/A N/A 0.495±0.00 1.206±0.00 N/A N/A N/A N/A N/A N/A
ENST00000615216 N/A N/A 2.079±0.00 N/A 0.566±0.00 1.966±0.00 1.151±0.00 0.827±0.00 2.220±0.00 N/A N/A 0.989±0.55 0.381±0.18 0.763±0.00
ENST00000622617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.166±0.00 2.118±0.00 3.178±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_00077Q CIL_00077Q_0001 CGP 16:52438005-53329150
CIL_0009C3 CIL_0009C3_0001 VISTA 16:52653279-53264699

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0016787 IEA hydrolase activity
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074498 chd9 chromodomain helicase DNA binding protein 9 protein_coding Danio_rerio
ENSMUSG00000056608 Chd9 chromodomain helicase DNA binding protein 9 protein_coding Mus_musculus

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