C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000566029 CHD9-001 ENSG00000177200 9606 + 16:53055033-53329150 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyENST00000566029
Transcript ID Adipose Brain Heart Kidney
ENST00000566029 0.415±0.00 0.529±0.00 0.495±0.00 1.206±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_00077Q CIL_00077Q_0001 CGP 16:52438005-53329150
CIL_0009C3 CIL_0009C3_0001 VISTA 16:52653279-53264699

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048665 Chd9-201 protein_coding Mus_musculus 0 8648
ENSMUST00000109614 Chd9-202 protein_coding Mus_musculus 0 8301
ENSMUST00000145380 Ckmt1-003 retained_intron Mus_musculus 0.0000004 64

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