C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein, large, P2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000177600 RPLP2 9606 + 11:809647-812880 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000321153 RPLP2-001 809647-812875 protein_coding
  ENST00000524867 RPLP2-003 810003-811839 retained_intron
  ENST00000525722 RPLP2-005 811372-812875 retained_intron
  ENST00000526222 RPLP2-008 810398-812861 processed_transcript
  ENST00000527517 RPLP2-007 812079-812850 retained_intron
  ENST00000530398 RPLP2-009 810269-812871 protein_coding
  ENST00000530797 RPLP2-002 809984-812874 protein_coding
  ENST00000532004 RPLP2-004 809965-812880 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321153ENST00000530398ENST00000530797
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321153 257.176±0.00 247.048±0.00 121.357±0.00 137.215±0.00 220.656±13.91 257.965±55.17 89.176±17.06 246.409±0.00 221.867±43.41 366.945±161.25 464.096±115.92 575.205±283.00 391.893±103.77 141.425±0.00
ENST00000530398 N/A N/A N/A 84.980±0.00 198.598±0.00 179.499±0.00 N/A N/A N/A 148.796±0.00 120.904±0.00 N/A N/A N/A
ENST00000530797 1864.510±0.00 2112.120±0.00 N/A 273.673±0.00 1570.340±0.00 1144.800±0.00 145.277±113.10 754.997±0.00 418.279±0.00 1514.410±0.00 1255.400±0.00 1869.183±396.41 1047.604±157.75 612.665±224.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003EP CIL_0003EP_0001 CGP 11:799179-812880
CIL_0003EM CIL_0003EM_0001 CGP 11:809647-825573

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS:IEA translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011201 rplp2l ribosomal protein, large P2, like protein_coding Danio_rerio
ENSMUSG00000025508 Rplp2 ribosomal protein, large P2 protein_coding Mus_musculus

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