C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein, large, P2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321153 RPLP2-001 ENSG00000177600 9606 + 11:809647-812875 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321153
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321153 257.176±0.00 247.048±0.00 121.357±0.00 137.215±0.00 220.656±13.91 257.965±55.17 89.176±17.06 246.409±0.00 221.867±43.41 366.945±161.25 464.096±115.92 575.205±283.00 391.893±103.77 141.425±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003EP CIL_0003EP_0001 CGP 11:799179-812880
CIL_0003EM CIL_0003EM_0001 CGP 11:809647-825573

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS:IEA translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084434 Rplp2-001 protein_coding Mus_musculus 0 544
ENSMUST00000062370 Wdr89-001 protein_coding Mus_musculus 0 510
ENSMUST00000106003 Rplp2-005 protein_coding Mus_musculus 0 503
ENSMUST00000106004 Rplp2-004 protein_coding Mus_musculus 0 503
ENSMUST00000191005 Rplp2-ps1-002 unprocessed_pseudogene Mus_musculus 0 460
ENSMUST00000134636 Rplp2-006 processed_transcript Mus_musculus 0 298
ENSMUST00000117848 Gm8805-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000117283 Gm15198-001 processed_pseudogene Mus_musculus 0 233

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