C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 12 open reading frame 42
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179088 C12orf42 9606 - 12:103237591-103496010 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000378113 C12orf42-201 103301943-103496010 protein_coding
  ENST00000546526 C12orf42-006 103268542-103495958 processed_transcript
  ENST00000547347 C12orf42-004 103237591-103495968 nonsense_mediated_decay
  ENST00000547470 C12orf42-015 103262267-103267892 processed_transcript
  ENST00000548048 C12orf42-003 103301955-103495966 protein_coding
  ENST00000548196 C12orf42-005 103476900-103495971 processed_transcript
  ENST00000548789 C12orf42-008 103305974-103495946 processed_transcript
  ENST00000548883 C12orf42-001 103301943-103495968 protein_coding
  ENST00000549927 C12orf42-013 103262270-103269853 processed_transcript
  ENST00000550497 C12orf42-009 103349123-103495925 processed_transcript
  ENST00000550650 C12orf42-011 103267609-103441591 processed_transcript
  ENST00000551134 C12orf42-002 103301955-103495971 nonsense_mediated_decay
  ENST00000551303 C12orf42-014 103263308-103267925 processed_transcript
  ENST00000552372 C12orf42-012 103396493-103456275 processed_transcript
  ENST00000552578 C12orf42-007 103305982-103495953 protein_coding
  ENST00000552977 C12orf42-010 103269820-103441595 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastLiverOvaryPlacentaTestisENST00000378113ENST00000546526ENST00000547347ENST00000547470ENST00000548196ENST00000548883ENST00000550497ENST00000552578ENST00000552977
Transcript ID Adipose Adrenal Brain Breast Liver Ovary Placenta Testis
ENST00000378113 N/A N/A N/A N/A N/A N/A 0.054±0.00 5.888±2.14
ENST00000546526 N/A N/A N/A 0.056±0.00 N/A N/A 0.067±0.00 N/A
ENST00000547347 N/A N/A 0.012±0.00 0.074±0.00 N/A 0.018±0.00 0.020±0.00 N/A
ENST00000547470 N/A N/A N/A N/A 0.353±0.00 N/A N/A N/A
ENST00000548196 N/A N/A N/A N/A N/A N/A N/A 6.140±0.00
ENST00000548883 N/A 0.261±0.00 0.024±0.00 N/A 0.035±0.00 N/A 0.053±0.00 2.529±0.00
ENST00000550497 0.108±0.00 N/A N/A N/A N/A 0.071±0.00 0.111±0.00 N/A
ENST00000552578 N/A N/A N/A N/A N/A 0.082±0.00 N/A 2.992±0.00
ENST00000552977 N/A N/A N/A N/A 0.699±0.00 0.199±0.00 0.075±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008O5 CIL_0008O5_0001 VISTA 12:102651485-103252902
CIL_0008WZ CIL_0008WZ_0001 VISTA 12:102677571-103278832
CIL_0008TA CIL_0008TA_0001 VISTA 12:102711332-103315018
CIL_0009AL CIL_0009AL_0001 VISTA 12:102712107-103314512
CIL_0008NV CIL_0008NV_0001 VISTA 12:102712346-103314376
CIL_0008OX CIL_0008OX_0001 VISTA 12:102790564-103391741
CIL_00083Z CIL_00083Z_0001 VISTA 12:102877204-103479620
CIL_0007WM CIL_0007WM_0001 VISTA 12:102920166-103521542

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000047129 1700113H08Rik RIKEN cDNA 1700113H08 gene protein_coding Mus_musculus

Loading