C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: low density lipoprotein receptor class A domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179241 LDLRAD3 9606 + 11:35943981-36232136 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315571 LDLRAD3-001 35944078-36232136 protein_coding
  ENST00000524419 LDLRAD3-003 35943981-36230267 protein_coding
  ENST00000528989 LDLRAD3-002 35943981-36230267 protein_coding
  ENST00000529759 LDLRAD3-006 36163299-36227429 processed_transcript
  ENST00000532490 LDLRAD3-004 35944099-36229313 processed_transcript
  ENST00000534091 LDLRAD3-005 36109925-36229211 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315571ENST00000524419ENST00000528989ENST00000529759ENST00000532490
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315571 12.602±0.00 4.323±0.00 N/A 5.829±0.00 5.946±0.00 4.164±0.00 1.044±0.00 0.304±0.19 0.507±0.01 2.783±0.00 2.764±0.00 3.446±2.67 0.750±0.31 2.932±2.20
ENST00000524419 N/A N/A N/A 0.287±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.668±0.00
ENST00000528989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.167±0.00 0.908±0.00 N/A N/A
ENST00000529759 N/A N/A 0.609±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532490 N/A N/A N/A N/A N/A 1.178±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZW CIL_0008ZW_0001 VISTA 11:35486453-36089359
CIL_0004KV CIL_0004KV_0002 CGP 11:35662805-36232136

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0006898 IEA receptor-mediated endocytosis
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IDA cell junction
GO:0070613 IEA regulation of protein processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078600 ldlrad3 low density lipoprotein receptor class A domain containing 3 protein_coding Danio_rerio
ENSMUSG00000048058 Ldlrad3 low density lipoprotein receptor class A domain containing 3 protein_coding Mus_musculus

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