C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: low density lipoprotein receptor class A domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315571 LDLRAD3-001 ENSG00000179241 9606 + 11:35944078-36232136 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315571
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315571 12.602±0.00 4.323±0.00 5.829±0.00 5.946±0.00 4.164±0.00 1.044±0.00 0.304±0.19 0.507±0.01 2.783±0.00 2.764±0.00 3.446±2.67 0.750±0.31 2.932±2.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZW CIL_0008ZW_0001 VISTA 11:35486453-36089359
CIL_0004KV CIL_0004KV_0002 CGP 11:35662805-36232136

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IEA beta-amyloid binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0006898 IEA receptor-mediated endocytosis
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IDA cell junction
GO:0070613 IEA regulation of protein processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058790 Ldlrad3-001 protein_coding Mus_musculus 0 1419
ENSMUST00000111222 Ldlrad3-002 protein_coding Mus_musculus 0 1085
ENSMUST00000127888 Ldlrad3-003 processed_transcript Mus_musculus 0 230

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